Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b05
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.60 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   7.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   7.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = -2

Query: 359 RQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFN 180
           R  ++VN +      NF   G    E + N    N  Q++++ N N     ++++N   N
Sbjct: 382 RMQKIVNDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDNIQNTNN----QNDNNQKNN 437

Query: 179 DRDDINEPN 153
            ++  N+ N
Sbjct: 438 KKNANNQKN 446


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 129 NFIFTELYIWFIN-IIPV 179
           +FI + + +WFIN IIP+
Sbjct: 397 SFIVSTILLWFINKIIPI 414


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 56  NAADAGCHKCLEKGK 12
           +A   GC+KC EK K
Sbjct: 66  DALSTGCNKCNEKQK 80


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 56  NAADAGCHKCLEKGK 12
           +A   GC+KC EK K
Sbjct: 66  DALSTGCNKCNEKQK 80


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 341 NTNVYESTENFHFNGDEPTEKVSNKT 264
           N+N+ E  EN  F+ D+P    S  T
Sbjct: 6   NSNMTEFEENVSFDIDDPDFAPSKNT 31


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 378 LKHPLNVHKCF 410
           ++H L++HKCF
Sbjct: 552 VRHNLSLHKCF 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,240
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)