Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b04
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    29   0.70 
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   3.7  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    26   4.9  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   6.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   8.6  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   8.6  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 201 NIGTVRRFVIMKK*DLYASNVXIFLCAE*ISNVILDFKIPLRFYYFRFVTYILYICV-CV 25
           ++ T+ RF+++    L+   +  F C   +S   +  K P  FY+F+++ ++  +C+ CV
Sbjct: 185 HLATISRFILLDSMLLFFI-ISTFFC---LSRYHVYHKAPFTFYWFKWL-FLTGVCIGCV 239

Query: 24  C 22
           C
Sbjct: 240 C 240


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 377 VTSVSNISLCNVVTVPASDSRTGSCD 300
           ++S++N SLC++V+ P+S S   S D
Sbjct: 26  LSSIANPSLCDIVSSPSSVSSFASSD 51


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 459 MPLMLQIINYDRTFDYKIYIHIV 527
           +PL+  +INYD   D K YIH V
Sbjct: 351 IPLVDVVINYDIPTDSKAYIHRV 373


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 103 DIRNLLRTQKDXNIRGI*ISLFHYNKPSDCSNV 201
           DIR+L   +   N++ + I+L ++NKP+D + +
Sbjct: 304 DIRSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 741 LPPPFL-PIGSDAEISPSVENVHNTH 667
           LPPP L P G  + +S SV N  N H
Sbjct: 378 LPPPRLKPFGHTSVLSLSVPNASNKH 403


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 253 SRSLQKCLHEATPSCPSQLPVRESDAGTV-TTLHKDMFETLVTLVS 387
           S      L EA+ + P  + V E  AGTV TT+H    E   TL +
Sbjct: 121 SHEFTTTLAEASGTVPGTVEVVEPLAGTVTTTIHSGSVEYNTTLAT 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,005
Number of Sequences: 5004
Number of extensions: 66691
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)