Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b04
         (745 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017498-1|AAH17498.1|  432|Homo sapiens ZNF643 protein protein.       31   5.8  
AL137241-1|CAB70626.1|  432|Homo sapiens hypothetical protein pr...    31   5.8  
AL031985-7|CAI19857.1|  506|Homo sapiens zinc finger protein 643...    31   5.8  
BC068531-1|AAH68531.1|  856|Homo sapiens ATPase, H+ transporting...    30   7.6  
AF112972-1|AAD04632.1|  856|Homo sapiens TJ6 protein.                  30   7.6  

>BC017498-1|AAH17498.1|  432|Homo sapiens ZNF643 protein protein.
          Length = 432

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 739 PTPLPTYRKRCRNFTVRGKRSQYPYCCINSHSMSNIDCQSYHKNI 605
           P P+   RKR R +   GKRS+Y    +N HS S    +++  NI
Sbjct: 138 PGPIGLPRKRDRKYDTPGKRSRYNIDLVN-HSRSYTKMKTFECNI 181


>AL137241-1|CAB70626.1|  432|Homo sapiens hypothetical protein
           protein.
          Length = 432

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 739 PTPLPTYRKRCRNFTVRGKRSQYPYCCINSHSMSNIDCQSYHKNI 605
           P P+   RKR R +   GKRS+Y    +N HS S    +++  NI
Sbjct: 138 PGPIGLPRKRDRKYDTPGKRSRYNIDLVN-HSRSYTKMKTFECNI 181


>AL031985-7|CAI19857.1|  506|Homo sapiens zinc finger protein 643
           protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 739 PTPLPTYRKRCRNFTVRGKRSQYPYCCINSHSMSNIDCQSYHKNI 605
           P P+   RKR R +   GKRS+Y    +N HS S    +++  NI
Sbjct: 212 PGPIGLPRKRDRKYDTPGKRSRYNIDLVN-HSRSYTKMKTFECNI 255


>BC068531-1|AAH68531.1|  856|Homo sapiens ATPase, H+ transporting,
           lysosomal V0 subunit a2 protein.
          Length = 856

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 134 IXTLEAYKSHFFIITNRRTVPMFLRGQPYFFKDIKKSNSCLGVFRNVFT 280
           + T + Y     ++    +VP+   G+P F   +    SC GV R+ +T
Sbjct: 641 LYTGQEYVQRVLLVVTALSVPVLFLGKPLFLLWLHNGRSCFGVNRSGYT 689


>AF112972-1|AAD04632.1|  856|Homo sapiens TJ6 protein.
          Length = 856

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 134 IXTLEAYKSHFFIITNRRTVPMFLRGQPYFFKDIKKSNSCLGVFRNVFT 280
           + T + Y     ++    +VP+   G+P F   +    SC GV R+ +T
Sbjct: 641 LYTGQEYVQRVLLVVTALSVPVLFLGKPLFLLWLHNGRSCFGVNRSGYT 689


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,035,532
Number of Sequences: 237096
Number of extensions: 2231434
Number of successful extensions: 4401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4375
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)