Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b04
         (745 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY047578-1|AAK77310.1|  461|Drosophila melanogaster GH09064p pro...    31   1.7  
AE013599-612|AAF59118.2|  461|Drosophila melanogaster CG2183-PA ...    31   1.7  
AJ002073-1|CAA05172.1| 1073|Drosophila melanogaster hormone rece...    29   8.8  
AE014134-3270|AAF53914.1| 1078|Drosophila melanogaster CG1864-PB...    29   8.8  

>AY047578-1|AAK77310.1|  461|Drosophila melanogaster GH09064p
           protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 69  YFRFVTYILYICVCVCIKCKY 7
           YF++ T IL I V +C+KCK+
Sbjct: 439 YFKYTTIILGISVFICLKCKW 459


>AE013599-612|AAF59118.2|  461|Drosophila melanogaster CG2183-PA
           protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 69  YFRFVTYILYICVCVCIKCKY 7
           YF++ T IL I V +C+KCK+
Sbjct: 439 YFKYTTIILGISVFICLKCKW 459


>AJ002073-1|CAA05172.1| 1073|Drosophila melanogaster hormone
           receptor 38 protein.
          Length = 1073

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 745 PPPTPLPTYRKRCRNFTVRGKRSQYPYCCINSHSMSNIDCQS 620
           PPP P       CRN    G    +  CC +S+S SN +  S
Sbjct: 85  PPPLPTLPLIYPCRNLFPDGCDINHLACCSSSNSNSNCNSDS 126


>AE014134-3270|AAF53914.1| 1078|Drosophila melanogaster CG1864-PB,
           isoform B protein.
          Length = 1078

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 745 PPPTPLPTYRKRCRNFTVRGKRSQYPYCCINSHSMSNIDCQS 620
           PPP P       CRN    G    +  CC +S+S SN +  S
Sbjct: 85  PPPLPTLPLIYPCRNLFPDGCDINHLACCSSSNSNSNCNSDS 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,647,418
Number of Sequences: 53049
Number of extensions: 697515
Number of successful extensions: 1673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)