Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b04
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42843-7|AAA83598.2| 326|Caenorhabditis elegans Serpentine rece... 31 0.65
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 29 2.6
Z66513-14|CAN86619.1| 418|Caenorhabditis elegans Hypothetical p... 28 6.1
Z66513-13|CAN86618.1| 426|Caenorhabditis elegans Hypothetical p... 28 6.1
AF299333-1|AAK62992.1| 371|Caenorhabditis elegans phytochelatin... 28 6.1
AF299332-1|AAK62991.1| 371|Caenorhabditis elegans phytochelatin... 28 6.1
AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical... 28 8.0
AF067607-11|AAM81119.1| 412|Caenorhabditis elegans Innexin prot... 28 8.0
AF067607-10|AAM81118.1| 436|Caenorhabditis elegans Innexin prot... 28 8.0
>U42843-7|AAA83598.2| 326|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 5 protein.
Length = 326
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -1
Query: 196 WNSPTVCYNEKVRFICL*CXNLSVCGVNF*CHFRF*NSS*ILLF---SVCHVYTIYMCMC 26
W SPTV + + NL++CGVNF R ++F C T C
Sbjct: 29 WKSPTVIKTYSIITVNFAITNLTICGVNFILQMRMVPIEKTMIFVSYGPCQWLTDRTCFN 88
Query: 25 VYKMQIYI 2
+Y + +++
Sbjct: 89 LYSVLVHV 96
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 ILKSKMTLEIYSAHRKIXTLEAYKSHFFIITNRRTVPMFL--RGQPYFFKDIKKSNSCL 256
+LK KMT E + RK E K + TN+R P+F+ +G YF + +N+ L
Sbjct: 693 LLKDKMTEEEFECQRKKMHEERRKFREELRTNQRRRPVFICKQGANYFKSKHRHTNNKL 751
>Z66513-14|CAN86619.1| 418|Caenorhabditis elegans Hypothetical
protein F54D5.1b protein.
Length = 418
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 232 VLKKIWLPPQKHWNSPTVCYNEKVRFICL*CXNLSVCGVN 113
VL + + P+K W +P Y+E + C+ N+ G+N
Sbjct: 65 VLNALEVDPEKVWKAPWRFYHESMLDCCVPLENIRKSGIN 104
>Z66513-13|CAN86618.1| 426|Caenorhabditis elegans Hypothetical
protein F54D5.1a protein.
Length = 426
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 232 VLKKIWLPPQKHWNSPTVCYNEKVRFICL*CXNLSVCGVN 113
VL + + P+K W +P Y+E + C+ N+ G+N
Sbjct: 73 VLNALEVDPEKVWKAPWRFYHESMLDCCVPLENIRKSGIN 112
>AF299333-1|AAK62992.1| 371|Caenorhabditis elegans phytochelatin
synthase protein.
Length = 371
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 232 VLKKIWLPPQKHWNSPTVCYNEKVRFICL*CXNLSVCGVN 113
VL + + P+K W +P Y+E + C+ N+ G+N
Sbjct: 65 VLNALEVDPEKVWKAPWRFYHESMLDCCVPLENIRKSGIN 104
>AF299332-1|AAK62991.1| 371|Caenorhabditis elegans phytochelatin
synthase protein.
Length = 371
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 232 VLKKIWLPPQKHWNSPTVCYNEKVRFICL*CXNLSVCGVN 113
VL + + P+K W +P Y+E + C+ N+ G+N
Sbjct: 65 VLNALEVDPEKVWKAPWRFYHESMLDCCVPLENIRKSGIN 104
>AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical
protein Y102A5C.23 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -2
Query: 156 LYASNVXIFLCAE*ISNV----ILDFKIPLRFYYFRFVTYILYICVCVCI-KCKYTL 1
+Y + ++CA +++ IL + I FY+ + Y++++ C+ + C Y+L
Sbjct: 36 IYTIVLPFYICANKVNHERDKEILIYPITKHFYHMVIIYYLIFVLTCISVFFCFYSL 92
>AF067607-11|AAM81119.1| 412|Caenorhabditis elegans Innexin protein
18, isoform b protein.
Length = 412
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 243 DFLMSLKKYGCPLRNIGTVRRFVIMKK*DLYASNVXIFLCAE*ISNVILDFKIPLRFY-- 70
D LM + +G ++ F + K Y S+V IF+ A ++NVIL F + F
Sbjct: 169 DALMYQRDHGARRHSVYIFAIFKLGKFYGAYVSSVYIFIKALHLANVILQFMLLNSFLQT 228
Query: 69 --YFRFVTYILY 40
Y F ++LY
Sbjct: 229 SDYPMFGAHVLY 240
>AF067607-10|AAM81118.1| 436|Caenorhabditis elegans Innexin protein
18, isoform a protein.
Length = 436
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 243 DFLMSLKKYGCPLRNIGTVRRFVIMKK*DLYASNVXIFLCAE*ISNVILDFKIPLRFY-- 70
D LM + +G ++ F + K Y S+V IF+ A ++NVIL F + F
Sbjct: 169 DALMYQRDHGARRHSVYIFAIFKLGKFYGAYVSSVYIFIKALHLANVILQFMLLNSFLQT 228
Query: 69 --YFRFVTYILY 40
Y F ++LY
Sbjct: 229 SDYPMFGAHVLY 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,111
Number of Sequences: 27780
Number of extensions: 381655
Number of successful extensions: 941
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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