Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b04
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   4.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 283 ATPSCPSQLPVRESDAGTVTTLH 351
           AT + P QLP  ES      TLH
Sbjct: 449 ATTAAPPQLPTEESVDALCNTLH 471


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -1

Query: 745 PPPTPLPTYRKRCRNFTV-RGKRSQYPY 665
           PPP P P  + R R   + R  R  +P+
Sbjct: 384 PPPGPTPAQKARMRALNIDRVSRVFFPF 411


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 36 CVCVCIKCKYT 4
          C C C KCK T
Sbjct: 2  CYCTCEKCKIT 12


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 736 TPLPTYRKRCRNFTVRGKRSQYPYCCINSHSMSNIDCQSYHKNIFVPNH 590
           T L   R+  +N  V  + S+ P C I     S+++    HK+I+   H
Sbjct: 13  TSLTRLRRHIQN--VHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQH 59


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 327 CWHCDHITQRYV*D 368
           CWHC + TQ  + D
Sbjct: 606 CWHCFNCTQYQIRD 619


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,764
Number of Sequences: 438
Number of extensions: 5305
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)