Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b03
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.3  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    27   4.0  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   5.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   5.3  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   7.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 141 VPGCFSCFVRRPQKPDPCIMENLTESKEN 55
           VPGCFSCF R  +K       N+TE+  N
Sbjct: 397 VPGCFSCFDRLGEK-------NITETNSN 418


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 681 LCNPLNILLEGKVLCNCIFLSGKMNRA 761
           + N   +   G+ L NCIFLS +MN A
Sbjct: 245 VANDATLSTLGRKLPNCIFLSDEMNHA 271


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 369 PSKKTKCPNLLCLGNNPDMKKEIENR 292
           PS     P+++C+   PD+KK+ + +
Sbjct: 199 PSSFLDSPSIMCVSKQPDLKKDRQRK 224


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 177 VFCLFSIWLYF 209
           VF LFSIWLYF
Sbjct: 497 VFLLFSIWLYF 507


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +1

Query: 307 FLHVWIIAKAKQIGTFCFFGWIFTFSSLWTHLFRRNFRLRSSWSGTWRIVKASI 468
           ++H+++I   + + +  F  +   F S WT  F         W+  WR +  SI
Sbjct: 211 WMHIFVIIIVQILFSIPFLAY---FWSYWTQAFDFGRAFDYKWTVNWRFIPRSI 261


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 675 FGLKIKLNKKPKFEPSP-VEVTPRSSSVLQKPLAA-RSCHHLP 553
           F  ++K NKKPK   +P    TP+ +  +  P +  R+C+ +P
Sbjct: 83  FPAQLKENKKPKLPTTPQTPKTPKRTIQIVTPKSLNRTCNPVP 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,113
Number of Sequences: 5004
Number of extensions: 70919
Number of successful extensions: 227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)