Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b03
(785 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein. 31 4.7
BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-co... 31 4.7
AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled co... 31 4.7
AK126633-1|BAC86622.1| 205|Homo sapiens protein ( Homo sapiens ... 31 6.2
L40731-1|AAA99383.1| 99|Homo sapiens immunoglobulin kappa chai... 30 8.2
AY008271-1|AAG16639.1| 1026|Homo sapiens helicase SMARCAD1 protein. 30 8.2
AK027490-1|BAB55150.1| 702|Homo sapiens protein ( Homo sapiens ... 30 8.2
AB208949-1|BAD92186.1| 485|Homo sapiens Hypothetical protein DK... 30 8.2
AB032948-1|BAA86436.1| 1048|Homo sapiens KIAA1122 protein protein. 30 8.2
>D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein.
Length = 1593
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = -1
Query: 512 LATGQHVRVLLAVIPIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQNVPICFA 333
LA HVR+ F +LH Q+ + LL+ ++ LE VKI VP +
Sbjct: 446 LANNLHVRLKWC-----CFVMLHAD-QDGEKLQALLRLVIELLERVKIVEALSTVPQMYC 499
Query: 332 LAIIQT*RKKLKI 294
LA+++ R+K+ I
Sbjct: 500 LAVVEVVRRKMFI 512
>BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-coil
1 protein.
Length = 1594
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = -1
Query: 512 LATGQHVRVLLAVIPIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQNVPICFA 333
LA HVR+ F +LH Q+ + LL+ ++ LE VKI VP +
Sbjct: 444 LANNLHVRLKWC-----CFVMLHAD-QDGEKLQALLRLVIELLERVKIVEALSTVPQMYC 497
Query: 332 LAIIQT*RKKLKI 294
LA+++ R+K+ I
Sbjct: 498 LAVVEVVRRKMFI 510
>AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled coil
protein protein.
Length = 1594
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = -1
Query: 512 LATGQHVRVLLAVIPIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQNVPICFA 333
LA HVR+ F +LH Q+ + LL+ ++ LE VKI VP +
Sbjct: 444 LANNLHVRLKWC-----CFVMLHAD-QDGEKLQALLRLVIELLERVKIVEALSTVPQMYC 497
Query: 332 LAIIQT*RKKLKI 294
LA+++ R+K+ I
Sbjct: 498 LAVVEVVRRKMFI 510
>AK126633-1|BAC86622.1| 205|Homo sapiens protein ( Homo sapiens
cDNA FLJ44675 fis, clone BRACE3007869. ).
Length = 205
Score = 30.7 bits (66), Expect = 6.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = -3
Query: 621 EVTPRSSSVLQKPLAARSCHHLPHCMP---PSSCFPYLMPCYWPARAGAPCSHP 469
++ P +S+L P A LP P P+ P P WP R C HP
Sbjct: 57 QLPPCPASLLHSPFHALHLPTLPQGCPFPLPALYPPQPFPALWPGRGAPLCCHP 110
>L40731-1|AAA99383.1| 99|Homo sapiens immunoglobulin kappa chain
protein.
Length = 99
Score = 30.3 bits (65), Expect = 8.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 593 STELDRGVTSTGEGSNFGFLFSFIFNPKQVVQSTKHFVGGQGTLQLHFSLG 745
++ L+ GV S GS G FSFI Q ++ G L LHF G
Sbjct: 43 ASNLESGVPSRFTGSGSGTNFSFITTSLQPEDIGTYYCLNYGNLALHFGQG 93
>AY008271-1|AAG16639.1| 1026|Homo sapiens helicase SMARCAD1 protein.
Length = 1026
Score = 30.3 bits (65), Expect = 8.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 662 IFNPKQVVQSTKHFVGGQ--GTLQLHFSLGQDEQGDGYGG 775
+FNPK+VV+ +++ G +L +S G++ DGY G
Sbjct: 348 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKG 387
>AK027490-1|BAB55150.1| 702|Homo sapiens protein ( Homo sapiens
cDNA FLJ14584 fis, clone NT2RM4001592. ).
Length = 702
Score = 30.3 bits (65), Expect = 8.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 662 IFNPKQVVQSTKHFVGGQ--GTLQLHFSLGQDEQGDGYGG 775
+FNPK+VV+ +++ G +L +S G++ DGY G
Sbjct: 348 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKG 387
>AB208949-1|BAD92186.1| 485|Homo sapiens Hypothetical protein
DKFZp434D229 variant protein.
Length = 485
Score = 30.3 bits (65), Expect = 8.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 636 EPSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPAR 493
EP P P S L P + H PH +PP SCFP + P R
Sbjct: 7 EPHPGTFHPAPS--LLDPASLCPWHLPPHPVPPGSCFPVSLAPSTPPR 52
>AB032948-1|BAA86436.1| 1048|Homo sapiens KIAA1122 protein protein.
Length = 1048
Score = 30.3 bits (65), Expect = 8.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 662 IFNPKQVVQSTKHFVGGQ--GTLQLHFSLGQDEQGDGYGG 775
+FNPK+VV+ +++ G +L +S G++ DGY G
Sbjct: 368 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKG 407
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,638,850
Number of Sequences: 237096
Number of extensions: 2649035
Number of successful extensions: 7912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7909
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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