Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b03
         (785 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021373-1|AAX33521.1|  286|Drosophila melanogaster LP02810p pro...    33   0.58 
AE013599-630|AAF59105.1|  286|Drosophila melanogaster CG11635-PA...    33   0.58 
AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p pro...    31   1.3  
AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-P...    31   1.3  
AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-P...    31   1.3  
AY058309-1|AAL13538.1|  544|Drosophila melanogaster GH07238p pro...    30   4.1  
AE014298-2566|AAF48726.1|  544|Drosophila melanogaster CG5529-PA...    30   4.1  
BT022495-1|AAY54911.1|  249|Drosophila melanogaster IP07934p pro...    29   5.4  
AE014298-2682|AAF48808.2|  249|Drosophila melanogaster CG12611-P...    29   5.4  
M73079-1|AAA28382.1|  543|Drosophila melanogaster BarH1 protein.       29   9.5  
AY973546-1|AAX84047.1|  962|Drosophila melanogaster midlife cris...    29   9.5  
AY973545-1|AAX84046.1|  962|Drosophila melanogaster midlife cris...    29   9.5  
AY118521-1|AAM49890.1|  774|Drosophila melanogaster LD17982p pro...    29   9.5  
AY052091-1|AAK93515.1|  445|Drosophila melanogaster SD04057p pro...    29   9.5  
AE014134-2948|AAF53681.1|  774|Drosophila melanogaster CG10414-P...    29   9.5  
AE013599-1093|AAF58795.2|  960|Drosophila melanogaster CG11763-P...    29   9.5  
AE013599-1092|ABC66064.1|  962|Drosophila melanogaster CG11763-P...    29   9.5  

>BT021373-1|AAX33521.1|  286|Drosophila melanogaster LP02810p
           protein.
          Length = 286

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 654 NKKPKFEPSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSC 529
           NK PK  PSP +  P S S  + P A R C    HC+P + C
Sbjct: 19  NKPPK-PPSPPK-PPSSPSPPKSPSAKRECKIRTHCIPAAFC 58


>AE013599-630|AAF59105.1|  286|Drosophila melanogaster CG11635-PA
           protein.
          Length = 286

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 654 NKKPKFEPSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSC 529
           NK PK  PSP +  P S S  + P A R C    HC+P + C
Sbjct: 19  NKPPK-PPSPPK-PPSSPSPPKSPSAKRECKIRTHCIPAAFC 58


>AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p
           protein.
          Length = 872

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = -3

Query: 732 CSCKVPC--PPTKCLVDCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHH 559
           C+CK PC  PPTK +  C  C     + N+ P   P+P    P  S+    P     C+H
Sbjct: 660 CNCKKPCPTPPTKEMRTC-GCSANLPEENEDP--PPAPSNPPPAPSNPPPVP-----CNH 711

Query: 558 LPH-----CMPPSSCFP---YLMPC 508
            P      CMP S+  P   Y  PC
Sbjct: 712 APAPVNTCCMPCSNQCPWSWYYNPC 736


>AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-PB,
           isoform B protein.
          Length = 271

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = -3

Query: 732 CSCKVPC--PPTKCLVDCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHH 559
           C+CK PC  PPTK +  C  C     + N+ P   P+P    P  S+    P     C+H
Sbjct: 59  CNCKKPCPTPPTKEMRTC-GCSANLPEENEDP--PPAPSNPPPAPSNPPPVP-----CNH 110

Query: 558 LPH-----CMPPSSCFP---YLMPC 508
            P      CMP S+  P   Y  PC
Sbjct: 111 APAPVNTCCMPCSNQCPWSWYYNPC 135


>AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-PA,
           isoform A protein.
          Length = 872

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = -3

Query: 732 CSCKVPC--PPTKCLVDCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHH 559
           C+CK PC  PPTK +  C  C     + N+ P   P+P    P  S+    P     C+H
Sbjct: 660 CNCKKPCPTPPTKEMRTC-GCSANLPEENEDP--PPAPSNPPPAPSNPPPVP-----CNH 711

Query: 558 LPH-----CMPPSSCFP---YLMPC 508
            P      CMP S+  P   Y  PC
Sbjct: 712 APAPVNTCCMPCSNQCPWSWYYNPC 736


>AY058309-1|AAL13538.1|  544|Drosophila melanogaster GH07238p
           protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -3

Query: 600 SVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPARAGAPCSHPD 466
           S L KP+ A S    P   PPS+  P L P   P R+   CS  D
Sbjct: 493 SGLVKPIPAHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSD 537


>AE014298-2566|AAF48726.1|  544|Drosophila melanogaster CG5529-PA
           protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -3

Query: 600 SVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPARAGAPCSHPD 466
           S L KP+ A S    P   PPS+  P L P   P R+   CS  D
Sbjct: 493 SGLVKPIPAHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSD 537


>BT022495-1|AAY54911.1|  249|Drosophila melanogaster IP07934p
           protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 470 PIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQ 354
           P  ++ +L +P  ELL  K + + C+Q+LE    H K Q
Sbjct: 208 PTGSYVLLPLPPPELLIYKRMCRLCLQQLETNPTHQKIQ 246


>AE014298-2682|AAF48808.2|  249|Drosophila melanogaster CG12611-PA
           protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 470 PIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQ 354
           P  ++ +L +P  ELL  K + + C+Q+LE    H K Q
Sbjct: 208 PTGSYVLLPLPPPELLIYKRMCRLCLQQLETNPTHQKIQ 246


>M73079-1|AAA28382.1|  543|Drosophila melanogaster BarH1 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -3

Query: 600 SVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPARAGAPCSHPD 466
           S L KP+ A S    P   PPS+  P L P   P R+   CS  D
Sbjct: 492 SGLVKPIPAHSRSASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSD 536


>AY973546-1|AAX84047.1|  962|Drosophila melanogaster midlife crisis
           protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 108 PQKPDPCIMENLTESKENQSADGSPLPNTSNT*P 7
           P  P P +  + TE++EN   D SP P    T P
Sbjct: 68  PDHPSPPLNASETEARENSPHDHSPTPTFHQTAP 101


>AY973545-1|AAX84046.1|  962|Drosophila melanogaster midlife crisis
           protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 108 PQKPDPCIMENLTESKENQSADGSPLPNTSNT*P 7
           P  P P +  + TE++EN   D SP P    T P
Sbjct: 68  PDHPSPPLNASETEARENSPHDHSPTPTFHQTAP 101


>AY118521-1|AAM49890.1|  774|Drosophila melanogaster LD17982p
           protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 331 KAKQIGTFCFFGW---IFTF-SSLWTHLFRRNFRLRSSWSGT 444
           K K +G   FF W   I +F    W ++F  N R R  W+G+
Sbjct: 105 KQKGLGHHGFFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGS 146


>AY052091-1|AAK93515.1|  445|Drosophila melanogaster SD04057p
           protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 108 PQKPDPCIMENLTESKENQSADGSPLPNTSNT*P 7
           P  P P +  + TE++EN   D SP P    T P
Sbjct: 68  PDHPSPPLNASETEARENSPHDHSPTPTFHQTAP 101


>AE014134-2948|AAF53681.1|  774|Drosophila melanogaster CG10414-PA
           protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 331 KAKQIGTFCFFGW---IFTF-SSLWTHLFRRNFRLRSSWSGT 444
           K K +G   FF W   I +F    W ++F  N R R  W+G+
Sbjct: 105 KQKGLGHHGFFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGS 146


>AE013599-1093|AAF58795.2|  960|Drosophila melanogaster CG11763-PA,
           isoform A protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 108 PQKPDPCIMENLTESKENQSADGSPLPNTSNT*P 7
           P  P P +  + TE++EN   D SP P    T P
Sbjct: 68  PDHPSPPLNASETEARENSPHDHSPTPTFHQTAP 101


>AE013599-1092|ABC66064.1|  962|Drosophila melanogaster CG11763-PD,
           isoform D protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 108 PQKPDPCIMENLTESKENQSADGSPLPNTSNT*P 7
           P  P P +  + TE++EN   D SP P    T P
Sbjct: 68  PDHPSPPLNASETEARENSPHDHSPTPTFHQTAP 101


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,236,883
Number of Sequences: 53049
Number of extensions: 808431
Number of successful extensions: 2736
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)