Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b03
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-4|AAC24407.1|  772|Caenorhabditis elegans Zygotic epiderm...    30   1.6  
U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epiderm...    30   1.6  
U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epiderm...    30   1.6  
AF057568-1|AAC33438.1|  772|Caenorhabditis elegans kinesin-like ...    30   1.6  
AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like ...    30   1.6  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      30   2.2  
U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    29   2.9  
AC199158-7|ABO33284.1|  217|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC199158-3|ABO33287.1|  217|Caenorhabditis elegans Hypothetical ...    29   2.9  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81462-2|CAB03841.1|  263|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm recept...    28   8.7  

>U61955-4|AAC24407.1|  772|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform b protein.
          Length = 772

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 729 SCKVPCPPTKCLVDC 685
           S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477


>U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform a protein.
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 729 SCKVPCPPTKCLVDC 685
           S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477


>U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform c protein.
          Length = 777

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 729 SCKVPCPPTKCLVDC 685
           S ++PCPPT CL DC
Sbjct: 465 SREIPCPPTFCLTDC 479


>AF057568-1|AAC33438.1|  772|Caenorhabditis elegans kinesin-like
           protein ZEN-4b protein.
          Length = 772

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 729 SCKVPCPPTKCLVDC 685
           S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477


>AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like
           protein ZEN-4a protein.
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 729 SCKVPCPPTKCLVDC 685
           S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 690 DCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQK 586
           D  T  G  I+  ++ KF P PV VTP+   + QK
Sbjct: 147 DHMTAHGKSIQKQQRAKFVPVPVPVTPQEKIIPQK 181


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 690 DCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQK 586
           D  T  G  I+  ++ KF P PV VTP+   + QK
Sbjct: 147 DHMTAHGKSIQKQQRAKFVPVPVPVTPQEKIIPQK 181


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 690 DCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQK 586
           D  T  G  I+  ++ KF P PV VTP+   + QK
Sbjct: 147 DHMTAHGKSIQKQQRAKFVPVPVPVTPQEKIIPQK 181


>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 660 KLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCH 562
           K + KP     P   T  +SS+LQ P A  SCH
Sbjct: 435 KSDSKPGTSSEPSTTTSVTSSILQGPPATSSCH 467


>AC199158-7|ABO33284.1|  217|Caenorhabditis elegans Hypothetical
           protein AC8.11 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 666 KIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARS 568
           KI    + +F PSP  V PR S +LQ PL   S
Sbjct: 134 KINTRSQKRFSPSPSPVRPRKSMILQ-PLLKNS 165


>AC199158-3|ABO33287.1|  217|Caenorhabditis elegans Hypothetical
           protein AC8.4 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 666 KIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARS 568
           KI    + +F PSP  V PR S +LQ PL   S
Sbjct: 134 KINTRSQKRFSPSPSPVRPRKSMILQ-PLLKNS 165


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
 Frame = -3

Query: 633 PSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPA-RAGAPCSHPDRCF 457
           P P    P  + +   P+ A  C  +  C  P  C   + PC   + +  A C  P+  F
Sbjct: 38  PGPCVKPPCRTILACLPVEANGCARM-ECSAPKVCVERVRPCIGRSCKEIATCETPNSTF 96

Query: 456 HNXXXXXXXXXXXXXXPEEMCPETGKCEDPSKKTKCPNLL 337
                              +CP + KCE  + K  C   +
Sbjct: 97  P-LSVYYINFENYSACAAVVCPPSQKCELENGKPSCKKFI 135


>Z81462-2|CAB03841.1|  263|Caenorhabditis elegans Hypothetical
           protein C04H5.2 protein.
          Length = 263

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 5   PGYVFEVFGRGDPSADWFSFD 67
           P Y++  + +G+PSA+W+ +D
Sbjct: 186 PEYLWTTWAQGEPSANWWEYD 206


>U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm receptor
           protein 138 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 277 LAFPKS-IFNFFLHVWIIAKA-KQIGTFCFFGWIFTFSSL 390
           + FP + I N  L + I+ KA K  G +C+   IFT +S+
Sbjct: 10  VGFPSAQITNLILLILIVKKAYKMFGQYCYVMTIFTINSI 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,658,752
Number of Sequences: 27780
Number of extensions: 412645
Number of successful extensions: 1461
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)