Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b02
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0359 + 22508900-22509439 234 5e-62
02_01_0160 + 1116160-1116678 231 6e-61
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 224 5e-59
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 224 5e-59
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 201 6e-52
10_01_0309 + 3417602-3418147 186 2e-47
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 183 1e-46
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 173 1e-43
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 173 2e-43
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 151 8e-37
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 148 6e-36
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 137 1e-32
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 135 3e-32
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 125 3e-29
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 124 6e-29
06_01_0214 + 1634171-1634173,1634263-1634742 123 1e-28
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 98 6e-21
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 93 2e-19
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 70 2e-12
02_01_0086 + 613113-613532 65 5e-11
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 60 3e-09
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 58 1e-08
08_02_0053 + 11721658-11721689,11721960-11722710 50 2e-06
01_01_0077 - 585670-585787,585921-586687 39 0.004
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 37 0.020
10_01_0310 + 3425099-3425218 37 0.020
11_01_0535 + 4234282-4235082 30 1.8
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 30 1.8
07_03_1767 + 29338867-29338912,29339261-29339325,29339571-293396... 29 4.1
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 5.4
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 28 7.2
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 28 9.5
>09_06_0359 + 22508900-22509439
Length = 179
Score = 234 bits (573), Expect = 5e-62
Identities = 106/165 (64%), Positives = 131/165 (79%), Gaps = 7/165 (4%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVIPNF 615
FD+ + A G++V+EL +D PKT ENFR LCTGEKG G YKGS FHR+IPNF
Sbjct: 10 FDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNF 69
Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 435
M QGGDFT NGTGG+SIYG++F DENF L+HTGPGVLSMANAG +TNGSQFFI T +T+
Sbjct: 70 MCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTT 129
Query: 434 WLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 300
WLDG+HVVFG VV+G VV+++E GS SG T++R++I+DCGQ+A
Sbjct: 130 WLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLA 174
>02_01_0160 + 1116160-1116678
Length = 172
Score = 231 bits (564), Expect = 6e-61
Identities = 110/165 (66%), Positives = 125/165 (75%), Gaps = 7/165 (4%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVIPNF 615
FD+TV AP G+IV+EL + P+T ENFRALCTGEKG G YKGS FHRVIP F
Sbjct: 8 FDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEF 67
Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 435
M QGGDFT NGTGG+SIYG KF DE F KH PG+LSMANAG +TNGSQFFI TV S
Sbjct: 68 MCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFICTVPCS 127
Query: 434 WLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 300
WLDG+HVVFG VVEGM+VVK IE GS+ G T+K +VI DCGQ++
Sbjct: 128 WLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 224 bits (548), Expect = 5e-59
Identities = 104/164 (63%), Positives = 124/164 (75%), Gaps = 7/164 (4%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVIPNF 615
FDV +D P G++V+ L PKT ENFRALCTGEKG G +KGS FHR+IP+F
Sbjct: 55 FDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSF 114
Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 435
M+QGGDFT +G GG+SIYG KF DENF +KHTGPG+LSMANAG DTNGSQFFITTV TS
Sbjct: 115 MIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTVTTS 174
Query: 434 WLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 303
WLDG+HVVFG V+ GM+VV +IE G QSG ++VI D G++
Sbjct: 175 WLDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGEL 218
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 224 bits (548), Expect = 5e-59
Identities = 103/161 (63%), Positives = 127/161 (78%), Gaps = 4/161 (2%)
Frame = -2
Query: 773 FDVTVDDAP---LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 603
FD+++ + +G++VI L D P+T ENFRALCTGEKGFGYKGS FHRVI +FM+QG
Sbjct: 87 FDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQG 146
Query: 602 GDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDG 423
GDF NGTGGKSIYG F+DENF L HTGPGV+SMANAG +TNGSQFFI TVKT WLDG
Sbjct: 147 GDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDG 206
Query: 422 RHVVFGNVVEGMEVVKQIETFGSQSG-KTSKRIVIKDCGQI 303
RHVVFG V+EGM++VK IE+ + G + K++VI +CG++
Sbjct: 207 RHVVFGQVIEGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 201 bits (490), Expect = 6e-52
Identities = 94/164 (57%), Positives = 118/164 (71%), Gaps = 7/164 (4%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVIPNF 615
FD+T++ P G+IV+ L + PKT ENFRA+CTGEKG G YKG+ FHR+IP F
Sbjct: 44 FDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPFHRIIPGF 103
Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 435
M+QGGD + NGTG SIYG F DENF + H+ PG+LSMAN DTNGSQFFITTVK +
Sbjct: 104 MIQGGDTVSGNGTGCDSIYGGMFPDENFKINHSAPGLLSMANYAKDTNGSQFFITTVKLT 163
Query: 434 WLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 303
LDG+HVVFG V+ GM+VV +IE GSQSG +++I D G++
Sbjct: 164 RLDGKHVVFGKVLSGMDVVYKIEAEGSQSGTPRSKVLISDSGEL 207
>10_01_0309 + 3417602-3418147
Length = 181
Score = 186 bits (452), Expect = 2e-47
Identities = 92/164 (56%), Positives = 108/164 (65%), Gaps = 10/164 (6%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKG-------FGYKGSIFHRVIPNFM 612
D+ + +G++VIEL +D P T ENFR LCTGE+ YKGS FHRV+P FM
Sbjct: 16 DIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRVVPGFM 75
Query: 611 LQGGDFTNHNGTGGKSIY---GNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVK 441
QGGD T NGTGG+S F DE F +KH GPGV+SMANAG +TNGSQFFIT K
Sbjct: 76 CQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQFFITVDK 135
Query: 440 TSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 309
WLDGRHV FG VV GM V+ I+ G+ SGKT K +VI DCG
Sbjct: 136 APWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCG 179
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 183 bits (446), Expect = 1e-46
Identities = 83/113 (73%), Positives = 94/113 (83%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDF 594
FDV V P G+IVI L +V PKT +NFRALCTG+KG+GYKG FHR+I +FM+QGGDF
Sbjct: 70 FDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCSFHRIIKDFMIQGGDF 129
Query: 593 TNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 435
N+NGTGG+SIYG F+DENFTLKHTGPGVLSMANAG DTNGSQFFI TVK S
Sbjct: 130 QNNNGTGGRSIYGECFDDENFTLKHTGPGVLSMANAGPDTNGSQFFICTVKFS 182
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 173 bits (421), Expect = 1e-43
Identities = 92/173 (53%), Positives = 116/173 (67%), Gaps = 11/173 (6%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHRVIPNF 615
DV++ D P ++V EL +DV P+T ENFRALCTGE G G YKGS+FHRVI F
Sbjct: 12 DVSIGDEPDERMVFELFADVAPRTAENFRALCTGEMGIGQTSKKPLYYKGSLFHRVIKGF 71
Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 435
M QGGDF+N +G+GG+SIYG FEDENF L+H G+LSMANAG +TNGSQFFIT S
Sbjct: 72 MAQGGDFSNGDGSGGESIYGGTFEDENFVLRHDERGLLSMANAGPNTNGSQFFITFKHNS 131
Query: 434 WLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIV---IKDCGQIA*FKSL 285
LD + VFG ++ G +V+K+IE + G S +V I DCG++ K L
Sbjct: 132 RLDRKSTVFGKLILGNDVLKRIE-YVDVHGAGSTPVVPVRIVDCGELVDGKCL 183
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 173 bits (420), Expect = 2e-43
Identities = 92/179 (51%), Positives = 114/179 (63%), Gaps = 23/179 (12%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGY-------------------- 651
DV++ G+IV+EL + V P+T ENFRALCTGEKG
Sbjct: 38 DVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKISLKAASVCTR 97
Query: 650 --KGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGAD 477
KGS HR++ FM+QGGD T +GTGG+SIYG FEDENF LKH G+LSMANAG D
Sbjct: 98 WTKGSCIHRIVKGFMVQGGDITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPD 157
Query: 476 TNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCGQI 303
TNGSQFFITT +T LDG+HVVFG V++GM VV+ +E +S + IVI DCG++
Sbjct: 158 TNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVIVDCGEL 216
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 151 bits (365), Expect = 8e-37
Identities = 82/164 (50%), Positives = 103/164 (62%), Gaps = 8/164 (4%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVIPNFM 612
DV +D +G+IVI L DV PKT NFRALCTGE+G G YKGS FHR+IP FM
Sbjct: 43 DVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRIIPGFM 102
Query: 611 LQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSW 432
+QGGD +G G V++MAN+G D+NGSQF+ITT+KTSW
Sbjct: 103 IQGGDIVRGDGKGS---------------------VIAMANSGPDSNGSQFYITTIKTSW 141
Query: 431 LDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 303
LDG HVVFG V++GM+ V IE G+ +GK K++VI D G+I
Sbjct: 142 LDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKPRKKVVITDSGEI 185
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 148 bits (358), Expect = 6e-36
Identities = 70/122 (57%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
Frame = -2
Query: 665 KGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 486
K F +GS FHRVI FM+QGGD T +GTGG+SIYG KFEDENF LKH G+LSMAN+
Sbjct: 113 KIFHVQGSCFHRVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGMLSMANS 172
Query: 485 GADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCG 309
G +TNGSQFFITT +T LDG+HVVFG V++GM VV+ +E ++ + + + I DCG
Sbjct: 173 GPNTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDVEIVDCG 232
Query: 308 QI 303
++
Sbjct: 233 EL 234
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG 654
DV++ G+IVIEL + V P+T ENFRALCTGEKG G
Sbjct: 31 DVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVG 69
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 137 bits (331), Expect = 1e-32
Identities = 74/136 (54%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFT 591
D V +G I + L + PKT ENF C G+ Y IFHRVI FM+Q GD
Sbjct: 496 DNLVMHTSMGDIHLRLYPEECPKTVENFTTHC--RNGY-YDNLIFHRVIKGFMIQTGDPL 552
Query: 590 NHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHV 414
+GTGG+SI+G +FEDE + +L+H P LSMANAG +TNGSQFFITTV T WLD +H
Sbjct: 553 G-DGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHT 611
Query: 413 VFGNVVEGMEVVKQIE 366
VFG VV+GM+VV+QIE
Sbjct: 612 VFGRVVKGMDVVQQIE 627
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 135 bits (327), Expect = 3e-32
Identities = 71/135 (52%), Positives = 92/135 (68%), Gaps = 1/135 (0%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFT 591
+VT++ + +G IE+ PKTC NF L +G+ Y IFHR+I +F++QGGD T
Sbjct: 11 EVTLETS-MGAFTIEMYYKHAPKTCRNFLEL--SRRGY-YDNVIFHRIIKDFIVQGGDPT 66
Query: 590 NHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHV 414
G GG+SIYG KFEDE LKHTG G+LSMANAG +TNGSQFFIT LDG+H
Sbjct: 67 G-TGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHT 125
Query: 413 VFGNVVEGMEVVKQI 369
+FG V +GME+VK++
Sbjct: 126 IFGRVSKGMEIVKRL 140
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 125 bits (302), Expect = 3e-29
Identities = 66/127 (51%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = -2
Query: 743 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 564
G + +EL D+TP+TCENF C E G+ Y G IFHR I NFM+QGGD T G+GG+S
Sbjct: 354 GDLNLELHCDITPRTCENFLTHC--ENGY-YNGLIFHRSIKNFMIQGGDPTG-TGSGGES 409
Query: 563 IYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 387
I+G F+DE N L H+G GV+SMAN+G TNGSQFFI L+ +H VFG VV G+
Sbjct: 410 IWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGL 469
Query: 386 EVVKQIE 366
+ +E
Sbjct: 470 TTLSAME 476
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 124 bits (300), Expect = 6e-29
Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 5/101 (4%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE---KGF--GYKGSIFHRVIPNFML 609
FDVT+ P G+I +EL +D+ PKT ENFR CTGE G GYKG FHRVI +FM+
Sbjct: 41 FDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMI 100
Query: 608 QGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 486
QGGD+ +GTG SIYG KF+DENF KHTGPG+LSM +
Sbjct: 101 QGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMVRS 141
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -2
Query: 464 QFFITTVKTSWLDGRHVVFGNVV-EGMEVVKQIETFGSQSGKTSK-RIVIKDCGQI 303
QFFIT K WLD +HVVFG V+ +GM V++IE + K VI +CG++
Sbjct: 200 QFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 255
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 123 bits (297), Expect = 1e-28
Identities = 67/128 (52%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -2
Query: 746 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 567
LG I E+ D P+T ENF ALC G+ Y G+IFHR I FM+QGGD T G GG
Sbjct: 9 LGDIKCEVFCDQAPRTAENFLALCAS--GY-YDGTIFHRNIKGFMIQGGDPTG-TGKGGT 64
Query: 566 SIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 390
SI+G KF DE +LKH GV+SMAN+G +TNGSQFFIT K L+G + VF V+ G
Sbjct: 65 SIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVIHG 124
Query: 389 MEVVKQIE 366
EV+ +E
Sbjct: 125 FEVLDLME 132
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 98.3 bits (234), Expect = 6e-21
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Frame = -2
Query: 743 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 564
G + IEL PK NF LC +G+ Y G++FHRVI +F++QGGD T +GTGG+S
Sbjct: 22 GPLDIELWPKEAPKAVRNFVQLCL--EGY-YDGTLFHRVIKSFLVQGGDPTG-SGTGGES 77
Query: 563 IYGNKFEDENFT-LKHTGPGVLSMANAGAD-TNGSQFFITTVKTSWLDGRHVVFGNV 399
IYG F DE T L+ G+++ ANAG +NGSQFFI+ + WLD ++ +FG V
Sbjct: 78 IYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKV 134
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 93.1 bits (221), Expect = 2e-19
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Frame = -2
Query: 746 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 567
+G I ++L +D+ P T +NF LC K Y G +FH+V +F+ Q GD T G GG
Sbjct: 9 VGDIEVDLHTDMCPLTTKNFLKLC---KMKYYNGCLFHKVEKDFLAQTGDPTG-TGAGGD 64
Query: 566 SIY----GNK---FEDE-NFTLKHTGPGVLSMANAGADTNGSQFFIT-TVKTSWLDGRHV 414
S+Y G++ F+DE L+H+ G ++MA+AG + N SQF+IT +LD +H
Sbjct: 65 SVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDKHT 124
Query: 413 VFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 318
VFG V EG + + +I ET+ G+ K I IK
Sbjct: 125 VFGMVAEGFDTLTKISETYVDDKGRPFKDIRIK 157
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 70.1 bits (164), Expect = 2e-12
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = -2
Query: 761 VDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHN 582
V D G I IE+ D + + F +LC K +KG F VI NF++QGGDF + N
Sbjct: 97 VIDTAKGSITIEIYKDASADVVDRFVSLC---KSNHFKGMPFRHVIKNFVIQGGDF-DFN 152
Query: 581 GTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 405
G + I K EN + KH + + N + G FITT L+ + VVFG
Sbjct: 153 GAAQEWILKAKASGENALSPKHEAFMIGTTKNP--NNKGFDLFITTAPIPDLNDKLVVFG 210
Query: 404 NVVEGMEVVKQIE 366
V+ G ++V++IE
Sbjct: 211 QVINGQDIVQEIE 223
>02_01_0086 + 613113-613532
Length = 139
Score = 65.3 bits (152), Expect = 5e-11
Identities = 42/122 (34%), Positives = 58/122 (47%)
Frame = -2
Query: 731 IELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGN 552
+EL +D+ P T ENFRAL T +K YKG + P ++G +
Sbjct: 1 MELYADLVPLTAENFRALYT-KKPLHYKGLCLSQHYPRIHVEGRRLRQGPWHRRRVHLRR 59
Query: 551 KFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQ 372
+ENF L H P + N A+ N SQFF + W DG +VVFG ++ G +K
Sbjct: 60 HLPNENFLLPHDRPW---LPNGSAENNISQFF---TRVPWFDGNYVVFGCIISGFHNLKA 113
Query: 371 IE 366
IE
Sbjct: 114 IE 115
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 59.7 bits (138), Expect = 3e-09
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = -2
Query: 773 FDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHRVIPN 618
FD+ + +I EL +DV PKT ENFRALCTGE+G G +KG+ HR++
Sbjct: 12 FDIAIGGRAAERITFELFADVVPKTTENFRALCTGERGLGVSTQKPLYFKGTNMHRILKG 71
Query: 617 FMLQ 606
FM Q
Sbjct: 72 FMAQ 75
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = -2
Query: 446 VKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 300
V TS + +HVVFG VV GM ++K++E GS +GK + + I DCG+++
Sbjct: 87 VSTSCVS-KHVVFGKVVTGMPLLKKLEAVGSDTGKPTCEVKIVDCGEVS 134
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 57.6 bits (133), Expect = 1e-08
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Frame = -2
Query: 548 FEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVK-TSWLDGRHVVFGNVVEGMEVVK 375
F+DE + L+H+ G ++MA+AG + N SQF+IT +LD +H VFG V EG + +
Sbjct: 108 FDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVFGMVAEGFDTIT 167
Query: 374 QI-ETFGSQSGKTSKRIVIK 318
+I ET+ G+ K I I+
Sbjct: 168 KINETYVDDKGRPFKDIRIR 187
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 746 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHR 630
+G I ++L +D+ P T +NF LC G +G G F +
Sbjct: 9 VGDIEVDLHTDMCPLTTKNFLKLCKGNEGLVAGGLAFRK 47
>08_02_0053 + 11721658-11721689,11721960-11722710
Length = 260
Score = 50.4 bits (115), Expect = 2e-06
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Frame = -2
Query: 758 DDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNG 579
D PLG+++ L + P T NF+A CT Y+G++ H+++ G
Sbjct: 123 DSEPLGRVIFGLYGRLLPLTTANFKAACTSA---AYRGTLVHKLLQGQFFVAGRQGPRRD 179
Query: 578 TG------GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGS----------QFFITT 447
G G + + F LKH PG LS+ D + +F +TT
Sbjct: 180 RGEVQPPTGLVRNAETIDPKAFELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTT 239
Query: 446 --VKTSWLDGRHVVFGNVVEG 390
LDG+++VFG V+EG
Sbjct: 240 GPGPCPELDGQNIVFGTVLEG 260
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 770 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGG 600
DV++ P G+I I L D P F +L TG GY+ F +++P ++ GG
Sbjct: 80 DVSIGGEPAGRITIGLFGDAAPAGASRFLSLVTG---VGYRRKEFVKIVPGYVQHGG 133
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -2
Query: 530 TLKHTGPGVLSMA-NAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
T+KH G+LSM ++ ++ GS F I LDG++ VFG + +G + ++++E
Sbjct: 156 TVKHVR-GILSMGRHSDPNSGGSSFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLE 210
>10_01_0310 + 3425099-3425218
Length = 39
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -2
Query: 743 GKIVIELRSDVTPKTCENFRALCTG 669
G +VIE +D PKT ENFR +CTG
Sbjct: 8 GSVVIEQFADKVPKTTENFRPMCTG 32
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 310 PQSLITILLEVFPDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNW-EPLVSAP 486
P +L L+E WLP + + TT+ ST + T LP++ +L V + PL
Sbjct: 50 PAALAWCLMESPTLWLPPLVLSATTTSLSTPTLRVTILPAALYMLHYVHRTLVHPL---R 106
Query: 487 ALAMERTPGPV-CLRVKFS-SSNLL 555
L + R P P+ L + F S NLL
Sbjct: 107 LLRLRRAPAPMPILIIMFGFSFNLL 131
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 30.3 bits (65), Expect = 1.8
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 330 SLRGLPRLAAKGLNLLDNF--HAFNNIPKDNMSAIQPGGLDSG-DEELGTISISTGISHG 500
SLRGL R+ + G+N L N+ +Q L G EE+G ++ G+ G
Sbjct: 172 SLRGL-RVLSLGMNTLTGSIPSEIGNLANLMTLNLQFSNLTGGIPEEIGDLAGLVGLGLG 230
Query: 501 EDARSSVLKGEILVFKLIAVDGLS-PSAVMVGEVPSLQH 614
+ + + + L A+ LS PSA + G +PSLQ+
Sbjct: 231 SNQLAGSIPASL--GNLSALKYLSIPSAKLTGSIPSLQN 267
>07_03_1767 +
29338867-29338912,29339261-29339325,29339571-29339642,
29339913-29339956,29340047-29340158,29340879-29340950,
29341449-29341511,29341957-29342034,29342110-29342202,
29342294-29342413,29342762-29342845,29343094-29343309,
29343401-29343448,29343761-29343871,29344170-29344267,
29345004-29345248,29345764-29345832,29345919-29345983,
29346168-29346337,29346434-29346512,29346614-29346869,
29347416-29347461,29347602-29347710,29347820-29347882,
29350075-29350107,29350924-29351442
Length = 991
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 504 DARSSVLKGEILVFKLIAVDGLSPSAVMVGEV 599
DA +V GEIL+ ++ V G++PS V++ ++
Sbjct: 778 DAFVNVQNGEILLIEVNTVPGMTPSTVLIHQI 809
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 373 CLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAM 498
C T ++P +T PK+ L +S L V M+N + S ALA+
Sbjct: 2901 CFTAALPLSTIPKS--LNNSHFALEVTMRNGKKHASLRALAI 2940
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 471 ISISTGISHGEDARSSVLKGEILVF 545
++I T I HG D R+S L GE LVF
Sbjct: 119 LAILTAIFHGVDPRTSFLIGEGLVF 143
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 561 DGLSPSAVMVGEVPSLQHEIGDDTMEN 641
D ++MV E PSL E DD +EN
Sbjct: 796 DSCQKDSIMVSEYPSLVKEWADDKLEN 822
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,300,345
Number of Sequences: 37544
Number of extensions: 495778
Number of successful extensions: 1320
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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