Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b01
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376...    30   2.8  
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    29   4.8  
11_06_0321 - 22341267-22342565                                         29   6.4  
06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,622...    28   8.5  

>10_08_0497 -
           18336819-18337140,18337226-18337360,18337579-18337673,
           18337759-18337845,18337923-18338129,18338209-18338535,
           18338711-18338803,18338861-18339175,18339283-18339792,
           18339889-18339960,18341209-18341256,18341427-18341551,
           18341640-18341661
          Length = 785

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 754 WSYAIAKIPYSYMIELRSKKYRFKLPKDQIMETCKEILSAVKSLMEFI 611
           WSY+IA    S++  +R + +   +  D+     K+++  +K+  EF+
Sbjct: 534 WSYSIAFFEMSFLTLVRLQNFCKTVKADRFRREIKDLIHQIKASAEFV 581


>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 781 YYACGTSTDWSYAIAKIPYSYMIEL 707
           Y A GT+TD+ Y I K+P  +  E+
Sbjct: 265 YLAHGTTTDYMYDIVKVPMPFTFEI 289


>11_06_0321 - 22341267-22342565
          Length = 432

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 114 LYRKKRMGRLVRWSLYCTCN 173
           LYR +R  R+V   +YC+CN
Sbjct: 133 LYRLRREARIVEHMIYCSCN 152


>06_01_0824 -
           6219477-6219556,6220427-6220808,6221415-6221448,
           6222214-6222370,6224449-6224575,6224663-6224914
          Length = 343

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 785 HVLCAPYFVSH-TAAFNIA*TYVPXPLLP 868
           HV   P FV H TAA  I  ++VP P LP
Sbjct: 269 HVTAPPPFVHHPTAAAQIQGSFVPLPSLP 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,487,098
Number of Sequences: 37544
Number of extensions: 402467
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)