Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b01
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098994-5|AAC67473.3| 579|Caenorhabditis elegans Hypothetical ... 54 1e-07
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 54 1e-07
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 48 9e-06
AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical... 48 1e-05
AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical... 47 2e-05
Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z78413-12|CAB01666.3| 448|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z78411-5|CAB01647.3| 448|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF099003-2|AAC68743.2| 454|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF098994-3|AAT81188.1| 455|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF098994-2|AAT81187.1| 505|Caenorhabditis elegans Hypothetical ... 44 2e-04
AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical... 41 0.001
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z71267-9|CAA95852.2| 380|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z71262-14|CAN99672.1| 380|Caenorhabditis elegans Hypothetical p... 31 1.1
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 1.9
>AF098994-5|AAC67473.3| 579|Caenorhabditis elegans Hypothetical
protein T06A4.1a protein.
Length = 579
Score = 54.4 bits (125), Expect = 1e-07
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -2
Query: 829 ESSGVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK----YRFKLPKDQIM 662
E G Y+VG+ D+ Y A G S DW+ K+PY+Y+IELR K + F LP+ +I+
Sbjct: 359 ELYGTKYQVGTGADLMYEASGGSHDWAKGQLKVPYAYLIELRPKNTMMGHGFLLPEREIV 418
Query: 661 ETCKEILSAVK 629
T E ++K
Sbjct: 419 PTGLETFESIK 429
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 54.4 bits (125), Expect = 1e-07
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -2
Query: 829 ESSGVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK----YRFKLPKDQIM 662
E G Y+VG+ D+ Y A G S DW+ K+PY+Y+IELR K + F LP+ +I+
Sbjct: 359 ELYGTKYQVGTGADLMYEASGGSHDWAKGQLKVPYAYLIELRPKNTMMGHGFLLPEREIV 418
Query: 661 ETCKEILSAVK 629
T E ++K
Sbjct: 419 PTGLETFESIK 429
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 48.0 bits (109), Expect = 9e-06
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = -2
Query: 811 YKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKKY---RFKLPKDQIMETCKEIL 641
YKVG+ D Y A G S DW+ A + YS++ ELR ++ F L ++QI+ T +E
Sbjct: 370 YKVGTGADTLYPASGGSEDWAKGKAHVKYSFLFELRPEEQVWDGFLLAENQIIPTARETW 429
Query: 640 SAVK 629
AVK
Sbjct: 430 EAVK 433
>AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.19a protein.
Length = 468
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELR---SKKYRFKLPKDQIMETCK 650
G Y+ G+ ++ Y G STDW+ KI YSY IELR + F L K+Q++ T K
Sbjct: 333 GTKYRHGTGPEIIYAFSGGSTDWAKETLKIKYSYTIELRPGYEEWNGFVLDKNQLIPTAK 392
Query: 649 EILSAVKSLMEFIDRN*QSLVSYVSRSSRM 560
E + V +++ + +S S SR+
Sbjct: 393 ETWAGVTVVLDEVTNQWKSSRVRESELSRL 422
>AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical
protein Y47G6A.19b protein.
Length = 438
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELR---SKKYRFKLPKDQIMETCK 650
G Y+ G+ ++ Y G STDW+ KI YSY IELR + F L K+Q++ T K
Sbjct: 333 GTKYRHGTGPEIIYAFSGGSTDWAKETLKIKYSYTIELRPGYEEWNGFVLDKNQLIPTAK 392
Query: 649 EILSAVKSLME 617
E + V +++
Sbjct: 393 ETWAGVTVVLD 403
>Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical
protein ZC434.9b protein.
Length = 532
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK---YRFKLPKDQIMETCK 650
G YK G+ D+ Y + G S DW+ +I Y Y++ELR + F L + Q++ T K
Sbjct: 390 GTKYKFGTGSDILYPSAGGSDDWAKGTLRIKYVYLLELRPGEDVWDGFILDQHQLIPTAK 449
Query: 649 EILSAVKSLMEFI 611
E + +K ++ +
Sbjct: 450 ETWNGIKVVIRAV 462
>Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical
protein ZC434.9a protein.
Length = 581
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK---YRFKLPKDQIMETCK 650
G YK G+ D+ Y + G S DW+ +I Y Y++ELR + F L + Q++ T K
Sbjct: 390 GTKYKFGTGSDILYPSAGGSDDWAKGTLRIKYVYLLELRPGEDVWDGFILDQHQLIPTAK 449
Query: 649 EILSAVKSLMEFI 611
E + +K ++ +
Sbjct: 450 ETWNGIKVVIRAV 462
>Z78413-12|CAB01666.3| 448|Caenorhabditis elegans Hypothetical
protein F02D8.4 protein.
Length = 448
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -2
Query: 811 YKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELR--SKKYRFKLPKDQIMETCKEILS 638
Y V ++ D Y A G S DW+ + I YSY IEL F LP+D+I + C+E
Sbjct: 343 YTVVNSGDGLYPAAGASDDWAKSRG-IKYSYTIELSPIDDFTGFSLPEDRINQVCREAFQ 401
Query: 637 AVKSLM 620
A++ LM
Sbjct: 402 AIQVLM 407
>Z78411-5|CAB01647.3| 448|Caenorhabditis elegans Hypothetical
protein F02D8.4 protein.
Length = 448
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -2
Query: 811 YKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELR--SKKYRFKLPKDQIMETCKEILS 638
Y V ++ D Y A G S DW+ + I YSY IEL F LP+D+I + C+E
Sbjct: 343 YTVVNSGDGLYPAAGASDDWAKSRG-IKYSYTIELSPIDDFTGFSLPEDRINQVCREAFQ 401
Query: 637 AVKSLM 620
A++ LM
Sbjct: 402 AIQVLM 407
>AF099003-2|AAC68743.2| 454|Caenorhabditis elegans Hypothetical
protein Y59C2A.1 protein.
Length = 454
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -2
Query: 826 SSGVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELR----SKKYRFKLPKDQIME 659
++GV+Y G+ +M Y A GTS D+ +PY Y +ELR + F LP I
Sbjct: 374 TTGVSYSYGTISEMMYPASGTSIDFMQH-RGVPYIYGVELRPTDNPNSFAFNLPPSYIRA 432
Query: 658 TCKEILSAVKSL 623
T E+L+A+ ++
Sbjct: 433 TGDEMLAALNAI 444
>AF098994-3|AAT81188.1| 455|Caenorhabditis elegans Hypothetical
protein T06A4.3b protein.
Length = 455
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKKYR---FKLPKDQIMETCK 650
G Y VGS D Y A G S DW+ AK+ + Y++ELR + F L + +++ T +
Sbjct: 366 GTKYVVGSGADTLYPASGGSEDWAKHEAKVKFVYLLELRPDEKNWDGFILDEKELIPTAR 425
Query: 649 EILSAVKSLMEFI 611
E V+ + E +
Sbjct: 426 ETWEGVRVVAEAV 438
>AF098994-2|AAT81187.1| 505|Caenorhabditis elegans Hypothetical
protein T06A4.3a protein.
Length = 505
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSKKYR---FKLPKDQIMETCK 650
G Y VGS D Y A G S DW+ AK+ + Y++ELR + F L + +++ T +
Sbjct: 366 GTKYVVGSGADTLYPASGGSEDWAKHEAKVKFVYLLELRPDEKNWDGFILDEKELIPTAR 425
Query: 649 EILSAVKSLMEFI 611
E V+ + E +
Sbjct: 426 ETWEGVRVVAEAV 438
>AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical
protein Y47G6A.19c protein.
Length = 464
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELR---SKKYRFKLPKDQIMETCK 650
G Y+ G+ ++ CG STDW+ KI YSY IELR + F L K+Q++ T K
Sbjct: 333 GTKYRHGTGPEII---CG-STDWAKETLKIKYSYTIELRPGYEEWNGFVLDKNQLIPTAK 388
Query: 649 EILSAVKSLMEFIDRN*QSLVSYVSRSSRM 560
E + V +++ + +S S SR+
Sbjct: 389 ETWAGVTVVLDEVTNQWKSSRVRESELSRL 418
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -2
Query: 820 GVTYKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIELRSK---KYRFKLPKDQIMETCK 650
G Y++G+ D A G S DW+ + + Y Y+IELR + F L K +++ T
Sbjct: 401 GTNYRMGTGADTLSPAAGGSDDWAKSALNVKYVYLIELRPQMELSNGFILHKKELIPTAV 460
Query: 649 EILSAVKSLMEFI 611
E + +++ +
Sbjct: 461 ETFEGFREVVDAV 473
>Z71267-9|CAA95852.2| 380|Caenorhabditis elegans Hypothetical
protein W01A8.6 protein.
Length = 380
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 811 YKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIEL 707
Y+VG+ DM A G +TDW Y Y++EL
Sbjct: 282 YRVGTAADMLGTATGGATDWIKKNTPTKYVYVLEL 316
>Z71262-14|CAN99672.1| 380|Caenorhabditis elegans Hypothetical
protein W01A8.6 protein.
Length = 380
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 811 YKVGSTKDMTYYACGTSTDWSYAIAKIPYSYMIEL 707
Y+VG+ DM A G +TDW Y Y++EL
Sbjct: 282 YRVGTAADMLGTATGGATDWIKKNTPTKYVYVLEL 316
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +2
Query: 527 FNRETIFYQLLHSRTPTDITH*ALLISINKFHQTFDGAKNFLASLHNLVFG*FESVFFAP 706
+N T + + ++T +L+ ++FHQ G K ++ +HNL E ++
Sbjct: 319 YNDHTGNFDFYQGTSKFEVTEDSLVAKYSEFHQ---GLKKYVFHVHNLESNLMEKYYYQA 375
Query: 707 QFNHVRIWDLCN 742
+FN + + CN
Sbjct: 376 EFNSL-VQTHCN 386
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,639,951
Number of Sequences: 27780
Number of extensions: 395880
Number of successful extensions: 905
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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