Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a24
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   5.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   5.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   5.8  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   5.8  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   7.6  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   7.6  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 10  YPKTLDNRTNLSHRQDIKDTQVLS*LSFTHVCCTYGNNMDGKVDL 144
           Y   L+ + N           +LS L    + C YGN  DG +D+
Sbjct: 406 YENILEGKVNYPSYFSPASIDLLSHLLQRDITCRYGNLKDGSMDI 450


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 258  RIASITALAQGPVVDTHVLFGIQENAARWFFPVKPSLAQIHL 133
            RI  +TA  +   +D H+LF  +EN      P++P L  I L
Sbjct: 1068 RIRRMTAWPESDALDKHILF--KENIIP--IPIRPPLVDISL 1105


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 256 PLCKENHSSMVFLREHYWVLHNKPLFPSGVVAASVVHIEVFY 381
           P  +E + ++ FLR  YW L+N P F   +++   +   +FY
Sbjct: 296 PAVQEKYWNVGFLR--YWTLNNIPNFLFALLSIIPILFALFY 335


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 475 NSGKMSVLPRGIENCRPIARYGYVTAESSIYN 380
           N+   SV+P    +  P ARY  ++  +++Y+
Sbjct: 328 NNSNPSVIPESTSSREPAARYRKISERNAVYD 359


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 16   KTLDNRTNLSHRQDIKDTQVLS*LSFTHVCCTYGNNM 126
            KTL N TNL    +IK    +   +   +  T GNN+
Sbjct: 1027 KTLTNFTNLHSTSEIKLRNTMVIKTLLRIASTEGNNL 1063


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 296 GNITGSSTISRCFPLVWLRPRLSTSRSFIVNATFSCYISIPCNWPTVFNTSWQ 454
           G ++GS+  +  FPL  +R RL T  +    AT+  +I   C + T  N  ++
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFID--CFYKTTKNEGFR 392


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 247 NHGACTRPSGRYARTVWYPGECCPVVFPC 161
           N+GAC      +    W+   CC  V+PC
Sbjct: 325 NNGACEHYKKSFR---WFRFSCCDRVYPC 350


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 397 ESSIYNKRPRCGQPRPQPHQRETT 326
           ESSI N RPR  +   + H RE +
Sbjct: 640 ESSIENHRPRYSRQNSESHLRENS 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,253
Number of Sequences: 5004
Number of extensions: 46845
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)