Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a24
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 29 1.7
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 29 1.7
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 29 1.7
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 29 1.7
AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical ... 29 1.7
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 29 2.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 5.3
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 5.3
Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical p... 27 7.0
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 7.0
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 7.0
AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical ... 27 7.0
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 385 YNKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKP 284
YN+ GQP P P + +A P VP+ +P
Sbjct: 26 YNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQP 59
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 385 YNKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKP 284
YN+ GQP P P + +A P VP+ +P
Sbjct: 26 YNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQP 59
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 385 YNKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKP 284
YN+ GQP P P + +A P VP+ +P
Sbjct: 26 YNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQP 59
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 385 YNKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKP 284
YN+ GQP P P + +A P VP+ +P
Sbjct: 26 YNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQP 59
>AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical
protein C14C6.8 protein.
Length = 448
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -1
Query: 215 IRTYCLVSRRMLPGGFSLSSLHLPKSTLPSMLLPYVQQTCVKE--SQLKTCVSLMSCLCD 42
IR Y V +R+ PG H P + LP + +V+Q K S++K ++ C+
Sbjct: 365 IRHYRSVEQRVFPGALDRMMSHAPFNILP--IEQWVEQNLTKNILSRVKLVYDIVDVSCE 422
Query: 41 RLVLLSSV 18
+ + S+
Sbjct: 423 EKIKMYSI 430
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = -2
Query: 460 SVLPRGIENCRPIARYGYVTAE---SSIYNKRPRCGQPRPQPHQRETT----AYCGGPSN 302
+VL + N + + + T++ S+ + R R PHQ ++ Y N
Sbjct: 109 AVLKSAVRNTKEMRDFSRTTSQIERKSMRSVMERLPDNRHDPHQNQSNYNMLQYFSRKYN 168
Query: 301 VPLEKPCCYDFPCKADC 251
+P+ C Y CKADC
Sbjct: 169 LPMPTHC-YRHECKADC 184
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 367 CGQPRPQPHQRETTAYCGGPSNVPLEKPCCYDFPCKADC 251
CG PRP P P P PCC P A C
Sbjct: 71 CGAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPC 109
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/60 (26%), Positives = 21/60 (35%)
Frame = -2
Query: 331 TTAYCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYARTVWYPGECCPVVFPCQAF 152
TT P+ C C A C G +R G Y TV+ C + C+ F
Sbjct: 515 TTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSRRCGTYVETVYCNTNPCTGGYCCRPF 574
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/60 (26%), Positives = 21/60 (35%)
Frame = -2
Query: 331 TTAYCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYARTVWYPGECCPVVFPCQAF 152
TT P+ C C A C G +R G Y TV+ C + C+ F
Sbjct: 515 TTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSRRCGTYVETVYCNTNPCTGGYCCRPF 574
>Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 332 FPLVWLRPRLSTSRSFIVNATFSCYISIPCNWPTVFNTSWQY 457
+PL W+ P L T IVN T +S C T +W Y
Sbjct: 90 YPL-WVAPNLLTLIGLIVNLTTVLVLSFYCPTATETAPAWAY 130
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 135 LTIHVVTIRATDMCKRKSAQNLCVLDVL 52
L IH++ ++ + C+R A ++C LD +
Sbjct: 809 LVIHLINVQNKETCERNFAVSICSLDTV 836
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 135 LTIHVVTIRATDMCKRKSAQNLCVLDVL 52
L IH++ ++ + C+R A ++C LD +
Sbjct: 5655 LVIHLINVQNKETCERNFAVSICSLDTV 5682
>AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 332 FPLVWLRPRLSTSRSFIVNATFSCYISIPCNWPTVFNTSWQY 457
+PL W+ P L T IVN T +S C T +W Y
Sbjct: 90 YPL-WVAPNLLTLIGLIVNLTTVLVLSFYCPTATETAPAWAY 130
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 296 GNITGSSTISRCFPLVWLRPRLSTSRSFIVNATFSCYISIPC 421
G + G+ +++CF WL T R+ +V A IS PC
Sbjct: 288 GTLLGN-LLAQCFLYGWLGAWSKTKRAHLVAAGCGALISTPC 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,952
Number of Sequences: 27780
Number of extensions: 284594
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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