Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a24
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    28   0.056
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.52 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 26  ITELICHIDKTSRTHRF*ADFLLHMSVARMVTTWMVRWIWASEGLTGKN 172
           IT  IC      RTH      ++   +A +V  +++ WIW   G   +N
Sbjct: 140 ITAAICTSGIVGRTHTV-GYIIIGFLLAGIVQPFLIHWIWTPHGWMRRN 187


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 163 REKPPGSILLDTKQYVRIDHWALCKRRD 246
           R+  P ++LLD++ YV++  +   KR D
Sbjct: 490 RDLKPENLLLDSQGYVKLVDFGFAKRLD 517


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 457 VLPRGIENCRPIARYGYVTAESSIYNK 377
           +LPRG +   P   + YV+  SS YN+
Sbjct: 605 LLPRGKKEGMPFQLFLYVSPVSSEYNQ 631


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 457 VLPRGIENCRPIARYGYVTAESSIYNK 377
           +LPRG +   P   + YV+  SS YN+
Sbjct: 605 LLPRGKKEGMPFQLFLYVSPVSSEYNQ 631


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 382 NKRPRCGQPRPQP--HQRETTAYCGGPSNVPLEKP 284
           +++P  G P PQP  HQ       G P N P + P
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPN-PSQGP 46


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 215 IRTYCLVSRRMLPGGFSLSSLHLPK 141
           +  Y    R MLP   S S  H+PK
Sbjct: 230 LNAYYYYMREMLPYWMSSSQYHMPK 254


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 215 IRTYCLVSRRMLPGGFSLSSLHLPK 141
           +  Y    R MLP   S S  H+PK
Sbjct: 230 LNAYYYYMREMLPYWMSSSQYHMPK 254


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 310 VLHNKPLFPSGVVAASVVHIEVFYCKCYFQLLHIHTL 420
           +  N+P   + + +  +V  ++ + K  F  LH HT+
Sbjct: 226 IKQNRPTPAADIYSLGIVAWQMLFRKLPFAGLHSHTI 262


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 259 LCKENHSSMVFLREHYWVLHNK 324
           +CK  +SS+  LR H  + H +
Sbjct: 37  ICKRVYSSLNSLRNHKSIYHRQ 58


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 203 STCVSTTGPCASAV 244
           S+CVS  G C+S V
Sbjct: 919 SSCVSNDGGCSSLV 932


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,209
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)