Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a23
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   7.1  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   7.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 261  TLSTCHLYKMALLTSALHSSDIKNLWFSRLND 166
            T   CHLY+ +LL   +H++    L  + L+D
Sbjct: 1777 TAYDCHLYEQSLLFLTIHNTKTDELDITLLSD 1808


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 291  FQQQRAAYRRTLSTCHLYKMALLTSALHSSDIKN 190
            F Q+RAAY R +      +MALL   + ++++ N
Sbjct: 2211 FDQRRAAYFRQMRYGLYIRMALLACVMGATEVAN 2244


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 334  HITSTCYTSAMSASLPTTTRCLQTDTINLSPIQNGA 227
            + T++ YTSA +    ++T   ++ T+  +PI  G+
Sbjct: 1463 YYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGS 1498


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 122 LKGFGARITNLLIPTDYVIICIITIRYTFKYEFAFQNEN 6
           L+ +G  +  L I T   I+C+      F Y+FAF N+N
Sbjct: 754 LEAYGKTLYPLYI-TKEDIVCLEIDDRVFHYKFAFLNDN 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,652
Number of Sequences: 5004
Number of extensions: 61899
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)