Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a23
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816...    29   5.6  
06_01_0508 - 3674787-3675140,3675257-3675566,3675672-3675806,367...    28   7.4  

>05_03_0076 +
           8164466-8164511,8164643-8164698,8165529-8165867,
           8165938-8166012,8166674-8166846,8168697-8168795,
           8169002-8169161,8169321-8169464,8169551-8169723,
           8169796-8169991,8170061-8170258,8170864-8171016,
           8171838-8171959,8172037-8172136,8172221-8172316,
           8172400-8172530,8173717-8173819,8174373-8174555,
           8174632-8174724,8174818-8174853,8175672-8175773,
           8176310-8176472,8176557-8176678,8176994-8177158,
           8177667-8177849,8178679-8178831,8179136-8179288,
           8179373-8179444,8179530-8179664,8179739-8179800,
           8179999-8180096,8180628-8180737,8180832-8181005,
           8181092-8181157,8181847-8181915,8181989-8182099,
           8182418-8182558,8182638-8182766,8182864-8183029,
           8183174-8183388,8184883-8185089,8185501-8185572,
           8185897-8186010,8186090-8186281,8186489-8186569,
           8186654-8186728,8186812-8186878,8187292-8187452,
           8187943-8188116,8188209-8188337,8188421-8188504,
           8188589-8188650,8188728-8188800,8189008-8189142,
           8189790-8189960,8190054-8190319,8190440-8190458
          Length = 2448

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 182 NQRFLISELWRAEVRSAILYR*QVD-SVRL*AARCCWKTRRHSASVASGSYMNIANLNKV 358
           N  F   EL      S ILY    D S R  AA CC K   HS S +S S  +    N++
Sbjct: 483 NFNFKGHELLEFARESVILYLEDEDCSTRKAAATCCCKLVAHSLSASSSSQFSSNRPNRM 542


>06_01_0508 -
           3674787-3675140,3675257-3675566,3675672-3675806,
           3675891-3676100,3676193-3677359,3677397-3677587
          Length = 788

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 340 YIHITSTCYTSAMSASLPTTTRCLQTDTINLSPIQNGAPYF 218
           Y H ++        A+LP + + L+ D + +SPI++ AP F
Sbjct: 637 YRHASADLVVLPNGAALPISLKVLEHDILTVSPIKDLAPGF 677


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,838
Number of Sequences: 37544
Number of extensions: 339626
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)