Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a23
         (791 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC134342-1|AAI34343.1|  399|Homo sapiens sphingosine-1-phosphate...    31   6.3  
BC106905-1|AAI06906.1|  396|Homo sapiens SGPP2 protein protein.        31   6.3  
BC106904-1|AAI06905.1|  396|Homo sapiens SGPP2 protein protein.        31   6.3  
AF542512-1|AAN28731.1|  399|Homo sapiens sphingosine 1-phosphate...    31   6.3  
AC097461-1|AAX88957.1|  326|Homo sapiens unknown protein.              31   6.3  

>BC134342-1|AAI34343.1|  399|Homo sapiens sphingosine-1-phosphate
           phosphotase 2 protein.
          Length = 399

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   FSFWNANSYLNVYRIVIIHIIT*SVG-ISKFVILAPNPFKTPCIK 138
           F+ WN + YL+  R++II ++   +G ++K V+  P P   P +K
Sbjct: 108 FTHWNIDPYLS-RRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVK 151


>BC106905-1|AAI06906.1|  396|Homo sapiens SGPP2 protein protein.
          Length = 396

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   FSFWNANSYLNVYRIVIIHIIT*SVG-ISKFVILAPNPFKTPCIK 138
           F+ WN + YL+  R++II ++   +G ++K V+  P P   P +K
Sbjct: 105 FTHWNIDPYLS-RRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVK 148


>BC106904-1|AAI06905.1|  396|Homo sapiens SGPP2 protein protein.
          Length = 396

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   FSFWNANSYLNVYRIVIIHIIT*SVG-ISKFVILAPNPFKTPCIK 138
           F+ WN + YL+  R++II ++   +G ++K V+  P P   P +K
Sbjct: 105 FTHWNIDPYLS-RRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVK 148


>AF542512-1|AAN28731.1|  399|Homo sapiens sphingosine 1-phosphate
           phosphohydrolase 2 protein.
          Length = 399

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   FSFWNANSYLNVYRIVIIHIIT*SVG-ISKFVILAPNPFKTPCIK 138
           F+ WN + YL+  R++II ++   +G ++K V+  P P   P +K
Sbjct: 108 FTHWNIDPYLS-RRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVK 151


>AC097461-1|AAX88957.1|  326|Homo sapiens unknown protein.
          Length = 326

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   FSFWNANSYLNVYRIVIIHIIT*SVG-ISKFVILAPNPFKTPCIK 138
           F+ WN + YL+  R++II ++   +G ++K V+  P P   P +K
Sbjct: 35  FTHWNIDPYLS-RRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVK 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,105,072
Number of Sequences: 237096
Number of extensions: 2052622
Number of successful extensions: 2965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2965
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)