Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a23
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 137 RIVILRKKNVSFRRENQRFLISELWRAEVRSAILYR*QVDS 259
           R  +L+ K V+   +N+R  +S+ W  E R   + +   DS
Sbjct: 326 RKTVLKHKKVNKEADNERIRVSKFWNKEFREMAIEKRMADS 366


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
 Frame = -2

Query: 319 CYTSAMSASLPTTTRCL------QTDTINLSP-IQNGAPYFCP 212
           C  S +S+S P T++C       QTDT+NL+  IQ+ AP  CP
Sbjct: 247 CSCSQVSSSCPGTSQCQNKVCCQQTDTLNLNNLIQHQAP-LCP 288


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 94  FVILAPNPFKTPCIKDRHPEKKKRIV*ARKPKIFNIRTM 210
           F++L     KTP    RH  K+K +   R+ K+F + T+
Sbjct: 226 FIVLHERNKKTPPRPTRHISKRKELARMREAKLFTMSTI 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,712,542
Number of Sequences: 27780
Number of extensions: 338686
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)