Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a23
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   7.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 313 TSAMSASLPTTTRCLQ 266
           T++ +A+LP T RCL+
Sbjct: 360 TASSAATLPITFRCLE 375


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 585 RCKGDN*GATTVASGRILKTVPLNLLV 505
           RC   N G    A  R++ T PL++ V
Sbjct: 309 RCSASNPGGEASAEIRLIVTAPLHVEV 335


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 585 RCKGDN*GATTVASGRILKTVPLNLLV 505
           RC   N G    A  R++ T PL++ V
Sbjct: 309 RCSASNPGGEASAEIRLIVTAPLHVEV 335


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 337 IHITSTCYTSAMSASLPTTTRCLQTDTINLSPIQN 233
           I + + C  S M       T CL+ + +NL  I +
Sbjct: 6   ILLFTLCIVSYMMVRCDDITLCLKQENLNLDDIDS 40


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 285 QQRAAYRRTLSTCHLYKMALLTSALHSSDIK 193
           QQRA     LS      +A  TSAL S D K
Sbjct: 237 QQRAIINTLLSISASCVIAFATSALVSKDSK 267


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 528 TVPLNLLVGGVGYLTKKKRNT 466
           T P+N + GG+    K K  T
Sbjct: 65  TTPVNFVAGGIQQAGKPKEET 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,761
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)