Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a21
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764     28   8.0  
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502...    28   8.0  

>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
          Length = 515

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 439 ALPRCESSGCESVLTVHERECVMTRCR 359
           A  RC++  C+SVL   E +C +  CR
Sbjct: 160 AYERCKNISCQSVLPAEECDCDVCCCR 186


>09_04_0479 -
           17948043-17949037,17949554-17949715,17949809-17950262,
           17952895-17953326
          Length = 680

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 431 ALRVQWVRVGTNSTRA*MCDDEVSSSSGMHFLEPVCEL 318
           +L ++++    N+  A + DD++ +S  M FLE + EL
Sbjct: 568 SLSMRFLNAMKNNKLADILDDQIKNSENMPFLEEIAEL 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,334
Number of Sequences: 37544
Number of extensions: 223285
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)