Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a20
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.5  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.0  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.0  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 289 YTPSNR*NMTGRDLHTQYAV*ATAYCSNSFIEYDLFALRPVHMS--CSLYFGMFRVLAVY 462
           + P+ + N+ G DL  Q  +  TA+   S I   +F+           +    F++  VY
Sbjct: 133 WEPNGKINVKGVDLAVQIDI--TAH--RSHISRQVFSKNSFRSDQLVKIPLSSFKLGQVY 188

Query: 463 FDSIFILFYVMLFIMIPLXNILLYFAF 543
            + I  LF V   I +   N+L+YF F
Sbjct: 189 DERIVPLFGVDCGITVTESNLLVYFNF 215


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 524 YYYILHLAWMVCT 562
           Y Y+L+ AW+VCT
Sbjct: 41  YLYLLYKAWIVCT 53


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 397 ALRPVHMSC--SLYFGMFRVLAVYFDSIFILFYVMLFIMI 510
           A RP+ +S   S++   ++  AV F   F+LF+V + IMI
Sbjct: 37  AYRPLELSPTPSIFARNYQRNAVDFTGFFVLFWVAVSIMI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,844
Number of Sequences: 5004
Number of extensions: 42867
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)