Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a19
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   4.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   7.1  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   7.1  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 400 RNGLNLISYLASYMNILLLQYLFEII*IYLTASEFFIK 287
           R+G+N I YL    NI+L +    +I + L  SE FI+
Sbjct: 719 RSGIN-IRYLGEIANIILQKSPNNVILLKLVTSEIFIR 755


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 555 YPS-PIE*KINVNCVHCLVCT-EFKTAYMTDININLRFTENTLMTLHSL 695
           YP  P+    N N      C  E+    +TD  ++L  T ++ +TLHSL
Sbjct: 562 YPKMPLSLPFNENAPEAFKCLPEYFIETITDYMLSLFKTSSSTLTLHSL 610


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 59  HDHIIEIKALFTRLLRLIS*ARCVHINISHYIRKSFYTK 175
           H H+I + ALF +++ ++S     H++ +HY + S  T+
Sbjct: 39  HMHVILLSALFYQIINILSPVISRHLS-THYAKLSKKTR 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,451
Number of Sequences: 5004
Number of extensions: 50803
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)