Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a18
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0235 + 1944542-1944761,1945129-1945703                           30   2.5  
06_01_0856 - 6495222-6495548,6496046-6496440,6496573-6496914,649...    28   7.7  
01_06_0583 + 30400317-30401681                                         28   7.7  

>08_01_0235 + 1944542-1944761,1945129-1945703
          Length = 264

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 769 SATINSPLSTPAIFYPNFTSWSQVATKLLSGGL 671
           +AT +S +  P  F  +FT+W  ++T L SG L
Sbjct: 181 TATASSDVMVPYEFTKHFTNWGDLSTALFSGKL 213


>06_01_0856 -
           6495222-6495548,6496046-6496440,6496573-6496914,
           6496992-6497129,6497426-6497502,6497585-6497656,
           6498025-6498075,6498458-6498529,6498614-6498746,
           6498869-6498947
          Length = 561

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 797 GQIP-QLGIDISHNQLSTLNPSH-ILSEFHKLESSCNQAT 684
           G+IP +LG D+SHN LS + P++   S F  +  S N  T
Sbjct: 104 GKIPSELGRDLSHNNLSGIIPTNGSFSHFTPISFSNNPRT 143


>01_06_0583 + 30400317-30401681
          Length = 454

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 782 LGIDISHNQLSTLNPSHI--LSEFHKLESSCNQAT 684
           +G+D+S+N LS   PS I  L +  KL+ S N  T
Sbjct: 209 VGLDLSYNSLSGAIPSRIGELRQLQKLDLSSNNLT 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,839
Number of Sequences: 37544
Number of extensions: 324481
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)