Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a18
         (815 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2571|AAF53442.4| 1443|Drosophila melanogaster CG4168-PA...    62   7e-10
AY070524-1|AAL47995.1|  107|Drosophila melanogaster GH26458p pro...    46   8e-05

>AE014134-2571|AAF53442.4| 1443|Drosophila melanogaster CG4168-PA
            protein.
          Length = 1443

 Score = 62.5 bits (145), Expect = 7e-10
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
 Frame = -2

Query: 730  FYPNFTSWSQVATKLLSGGLILTGNPLECECEXXXXXXXXXXXLQENE-----AGAELRR 566
            FYPN + W  V T+ + GGLI + NPLECEC            L+E+         +L+R
Sbjct: 1321 FYPNKSYWDAVGTRSIMGGLITSHNPLECECGLVWFGHWLRRWLRESAQIKVIQKDDLKR 1380

Query: 565  AVREA---SCKDQL-GRRIPLLQLRADEAECHASALSSDAQ 455
             V+ A   +C D   GR +P+L++  ++  C ASALSS  Q
Sbjct: 1381 MVQRARANTCHDPTSGRHLPILEIFPEDLLCQASALSSSGQ 1421


>AY070524-1|AAL47995.1|  107|Drosophila melanogaster GH26458p
           protein.
          Length = 107

 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
 Frame = -2

Query: 679 GGLILTGNPLECECEXXXXXXXXXXXLQENEA-----GAELRRAVREA---SCKDQL-GR 527
           GGLI + NPLECEC            L+E+         +L+R V+ A   +C D   GR
Sbjct: 2   GGLITSHNPLECECGLVWFGHWLRRWLRESAQIKVIQKDDLKRMVQRARANTCHDPTSGR 61

Query: 526 RIPLLQLRADEAECHASALSSDAQ 455
            +P+L++  ++  C ASALSS  Q
Sbjct: 62  HLPILEIFPEDLLCQASALSSSGQ 85


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,431,705
Number of Sequences: 53049
Number of extensions: 592706
Number of successful extensions: 1242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)