Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a18
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 29 3.0
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 29 3.0
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 28 9.2
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 28 9.2
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 28 9.2
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 28 9.2
AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical ... 28 9.2
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 28 9.2
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 28 9.2
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 28 9.2
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 221 LITKLINIVIIEK*DVILNNFEGLKSRDLESRLCWLWSEILNLNQYFFCNSQFHF 57
++TK INI I EK D + ++ +DL W E+L+ FF NS F
Sbjct: 212 MVTKEINIGIHEKFDDEMKSYREFLGQDLPD-----WRELLSTASIFFINSNPFF 261
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 221 LITKLINIVIIEK*DVILNNFEGLKSRDLESRLCWLWSEILNLNQYFFCNSQFHF 57
++TK INI I EK D + ++ +DL W E+L+ FF NS F
Sbjct: 212 MVTKEINIGIHEKFDDEMKSYREFLGQDLPD-----WRELLSTASIFFINSNPFF 261
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 221 LITKLINIVIIEK*DVILNNFEGLKSRDLESRLCWLWSE 105
L+ KL+N+V + D I E LK L +R+ W +SE
Sbjct: 425 LVVKLVNVVANQNADEINRTLEKLK---LRARMLWKYSE 460
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 598 QENEAGAELRR--AVREASCKDQLGRRIPLLQLRADEAECHASALSSDAQLNH 446
+E EA E R A REA+ +DQ R A A A AL+ D Q H
Sbjct: 495 REREAAREREREQAAREAAARDQAAREHAQAVQAAAAAAQQAQALTPDMQHMH 547
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 598 QENEAGAELRR--AVREASCKDQLGRRIPLLQLRADEAECHASALSSDAQLNH 446
+E EA E R A REA+ +DQ R A A A AL+ D Q H
Sbjct: 1007 REREAAREREREQAAREAAARDQAAREHAQAVQAAAAAAQQAQALTPDMQHMH 1059
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 598 QENEAGAELRR--AVREASCKDQLGRRIPLLQLRADEAECHASALSSDAQLNH 446
+E EA E R A REA+ +DQ R A A A AL+ D Q H
Sbjct: 1012 REREAAREREREQAAREAAARDQAAREHAQAVQAAAAAAQQAQALTPDMQHMH 1064
>AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical
protein Y57A10B.1 protein.
Length = 470
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 230 INHEHVSCCLH*YSKSYRVQNSPTVCSFC 316
+ + HVSC +H S R + P +C C
Sbjct: 219 LQYVHVSCLMHWLDISSRKLHRPAICELC 247
>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
receptor TOL-1 protein.
Length = 1221
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 800 LGQIPQLG-IDISHNQLSTLNPSHI--LSEFHKLESSCNQATVRWLD 669
L +I QL +D+S+NQL ++ P SE H L+ S N+ ++ + D
Sbjct: 444 LNKIKQLHTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKD 490
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 598 QENEAGAELRR--AVREASCKDQLGRRIPLLQLRADEAECHASALSSDAQLNH 446
+E EA E R A REA+ +DQ R A A A AL+ D Q H
Sbjct: 1012 REREAAREREREQAAREAAARDQAAREHAQAVQAAAAAAQQAQALTPDMQHMH 1064
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
(drosophila) family protein 1 protein.
Length = 1221
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 800 LGQIPQLG-IDISHNQLSTLNPSHI--LSEFHKLESSCNQATVRWLD 669
L +I QL +D+S+NQL ++ P SE H L+ S N+ ++ + D
Sbjct: 444 LNKIKQLHTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKD 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,737
Number of Sequences: 27780
Number of extensions: 315225
Number of successful extensions: 793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -