Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a16
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...   107   1e-24
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    29   0.74 
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    28   1.3  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   4.0  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   5.2  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.2  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score =  107 bits (258), Expect = 1e-24
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
 Frame = -2

Query: 558 DESVLNESDVISSAELVDSLAAAISGVAPLDIMPGCKDPNDVMLPQKPFHYCLFPKATEY 379
           D S  N +        +D + ++I     + +MPG  D +  +LPQ+P H  L  K+  +
Sbjct: 263 DTSAYNPNPTFQLDNFLDQVCSSID----VTLMPGPYDYSSTILPQQPLHPALLTKSKVW 318

Query: 378 --KSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQEVLKKTLEWRHLAPTCPD 205
              S + V+NP    +G    L TSG+ + D+ +Y    +S + ++ TL W H+ PT PD
Sbjct: 319 LGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPD 378

Query: 204 TVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQRIRIVSIPDF 52
           T+ C P  D D F++   P +Y  GN  +FG       EG RI++VS+P+F
Sbjct: 379 TLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTVI-NEGNRIQLVSVPEF 428


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 411 HYCLFPKATE--YKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQEVLKKTL 238
           +Y L P+ T    K+F   + PY    G +  L T G+    ++   N+   + +++KTL
Sbjct: 323 YYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLVVPNIKVYEVLVRKTL 382

Query: 237 E 235
           E
Sbjct: 383 E 383


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 450 KDPNDVMLPQKPFHYCLFPKATEYKSFRRVS 358
           K P   +LP K FHY L P   E+KS  RV+
Sbjct: 87  KGPRRFLLPPK-FHYRLSPPPGEFKSSPRVA 116


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -2

Query: 297 KDIMRYSNLDNSQEVLKKTLEWRHLAPTCPDTVPCTPSVDTDPFIIY---NCPAIYFS 133
           + I R+    + Q  +  TL      PT PD V   P  DT+  + Y   N  +IY S
Sbjct: 214 RKIKRFKKYSHQQTNVFDTLNVIDSYPTAPDQVALPPFPDTNSTLTYTPSNSQSIYSS 271


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 699 SKSADQILSLHLFLEWMSGLAGTSYYQEEVSKI 601
           ++  D+   ++L L W +   G+SY++ E  KI
Sbjct: 29  TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKI 61


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 546 LNESDVISSAELVDSLAAAISGVAPLD--IMPGCKDPNDVMLPQKPFHYCLFPKATEYK 376
           +N  ++ ++  ++ S A+A   V  +D   +   +   D +LP+K F +   PK  +YK
Sbjct: 27  INSCNIKAADNVLHSKASAFEKVNVVDKESIGNLQHHLDTVLPKKKFQFLRDPKTNDYK 85


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = -2

Query: 723 LMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVIIAGGV-FANHSDESV 547
           L   L +A    DQ+ SL LF+  +       YY +    I+   I+G +     +  S+
Sbjct: 671 LQKSLKIADACMDQLTSLKLFINILERY--FYYYDQHCESIIAKHISGLIDLTEQNMRSI 728

Query: 546 LNESDVISSAELVDSLAAAISGVAPLDIMPGCKD 445
           L  S     A    + A++I  VA + ++   K+
Sbjct: 729 LISSPADLIASDPRAYASSIWEVANVSVIDSLKN 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,973
Number of Sequences: 5004
Number of extensions: 57251
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)