Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a16
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0201 - 1592180-1592218,1592517-1592602,1592966-1593064,159...   186   2e-47
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960...    29   3.1  
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    29   4.1  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    28   7.2  

>03_01_0201 -
           1592180-1592218,1592517-1592602,1592966-1593064,
           1593131-1593232,1593398-1593525,1593602-1593693,
           1593798-1593869,1593964-1594032,1594116-1594199,
           1594292-1594407,1594752-1594875,1594947-1595053,
           1595725-1595875
          Length = 422

 Score =  186 bits (453), Expect = 2e-47
 Identities = 88/242 (36%), Positives = 144/242 (59%), Gaps = 6/242 (2%)
 Frame = -2

Query: 750 VRNEDRYIVLMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVIIAGGV- 574
           V +ED+Y+V +SGL++ S+  +  L   L ++ ++G  G    Q   S IVRV++AG   
Sbjct: 126 VTDEDKYVVFVSGLSIGSEKFNP-LQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSV 184

Query: 573 -----FANHSDESVLNESDVISSAELVDSLAAAISGVAPLDIMPGCKDPNDVMLPQKPFH 409
                F N    +  ++S +    + +D +   +    P+D+MPG  DP +  LPQ+P H
Sbjct: 185 HISPRFFNGQAVASKDQSRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLH 244

Query: 408 YCLFPKATEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQEVLKKTLEWR 229
            CLF  A  Y +F   SNP++ E+  +  +GTSG+ + D+ +YS+  +  E +++TL WR
Sbjct: 245 RCLFAGAATYNTFSSCSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWR 304

Query: 228 HLAPTCPDTVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQRIRIVSIPDFX 49
           HLAPT P+++ C P  D DPF++ +CP +YF GN D++ T L +G E Q++R++ IP F 
Sbjct: 305 HLAPTAPNSLGCYPYTDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFC 364

Query: 48  NS 43
           +S
Sbjct: 365 DS 366


>04_04_1371 +
           32995337-32995358,32995745-32995822,32995876-32996019,
           32997595-32997930,32998014-32998166,32998286-32998501,
           32998600-33000695
          Length = 1014

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/103 (24%), Positives = 47/103 (45%)
 Frame = -2

Query: 567 NHSDESVLNESDVISSAELVDSLAAAISGVAPLDIMPGCKDPNDVMLPQKPFHYCLFPKA 388
           N   ES+L +   + S E++D+ + A+SGV P  ++    +  ++ L    F   L    
Sbjct: 211 NWLQESILADLGELVSLEVLDASSNAMSGVVPTAVLKNLTNLKELNLSANGFSGSLPGSL 270

Query: 387 TEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQ 259
            E        +P    + G   + +S EPV   ++  NL+N++
Sbjct: 271 LELPHL----DPSGSSLAGRTPINSSLEPVS--LQVLNLNNNR 307


>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 384 EYKSFRRVSNPYECEIGGLLCLG 316
           E +  RR SNP  C +G  LCLG
Sbjct: 703 EEEIIRRFSNPSSCRLGIFLCLG 725


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 150 PAIYFSGNADEFGTTLYEGEEGQRIRIVSIP 58
           P++Y  G A  +GT+LY G    R  I   P
Sbjct: 84  PSMYLGGGAPPYGTSLYGGPALPRYGIAQFP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,279,408
Number of Sequences: 37544
Number of extensions: 346056
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)