Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a16
(778 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21090-1|AAC50216.1| 469|Homo sapiens DNA polymerase delta smal... 194 4e-49
BC000459-1|AAH00459.1| 469|Homo sapiens polymerase (DNA directe... 194 4e-49
AY116646-1|AAM51148.1| 469|Homo sapiens polymerase (DNA directe... 194 4e-49
AF239710-1|AAG09763.1| 469|Homo sapiens DNA polymerase delta sm... 194 4e-49
BC038451-1|AAH38451.1| 353|Homo sapiens GRAMD2 protein protein. 31 4.6
>U21090-1|AAC50216.1| 469|Homo sapiens DNA polymerase delta small
subunit protein.
Length = 469
Score = 194 bits (472), Expect = 4e-49
Identities = 93/249 (37%), Positives = 149/249 (59%), Gaps = 11/249 (4%)
Frame = -2
Query: 765 QXPLPVRNEDRYIVLMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVII 586
Q P P + DR+++L+SGL + + +L L ++ ++G G Q + + RVI+
Sbjct: 184 QKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVIL 243
Query: 585 AGGVFANHSDES--VLNESDVIS---------SAELVDSLAAAISGVAPLDIMPGCKDPN 439
AG + + HS +S +N++ ++ + +++D + +S P+D+MPG DP
Sbjct: 244 AGNLLS-HSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPT 302
Query: 438 DVMLPQKPFHYCLFPKATEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQ 259
+ LPQ+P H C+FP AT Y + + V+NPY+ I G+ LGTSG+ V DI RYS++++
Sbjct: 303 NYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHL 362
Query: 258 EVLKKTLEWRHLAPTCPDTVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQR 79
E+L+ TL RH++PT PDT+ C P TDPFI CP +YF GN FG+ + G E Q
Sbjct: 363 EILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQT 422
Query: 78 IRIVSIPDF 52
+ +V++PDF
Sbjct: 423 VLLVTVPDF 431
>BC000459-1|AAH00459.1| 469|Homo sapiens polymerase (DNA directed),
delta 2, regulatory subunit 50kDa protein.
Length = 469
Score = 194 bits (472), Expect = 4e-49
Identities = 93/249 (37%), Positives = 149/249 (59%), Gaps = 11/249 (4%)
Frame = -2
Query: 765 QXPLPVRNEDRYIVLMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVII 586
Q P P + DR+++L+SGL + + +L L ++ ++G G Q + + RVI+
Sbjct: 184 QKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVIL 243
Query: 585 AGGVFANHSDES--VLNESDVIS---------SAELVDSLAAAISGVAPLDIMPGCKDPN 439
AG + + HS +S +N++ ++ + +++D + +S P+D+MPG DP
Sbjct: 244 AGNLLS-HSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPT 302
Query: 438 DVMLPQKPFHYCLFPKATEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQ 259
+ LPQ+P H C+FP AT Y + + V+NPY+ I G+ LGTSG+ V DI RYS++++
Sbjct: 303 NYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHL 362
Query: 258 EVLKKTLEWRHLAPTCPDTVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQR 79
E+L+ TL RH++PT PDT+ C P TDPFI CP +YF GN FG+ + G E Q
Sbjct: 363 EILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQT 422
Query: 78 IRIVSIPDF 52
+ +V++PDF
Sbjct: 423 VLLVTVPDF 431
>AY116646-1|AAM51148.1| 469|Homo sapiens polymerase (DNA directed),
delta 2, regulatory subunit (50kD) protein.
Length = 469
Score = 194 bits (472), Expect = 4e-49
Identities = 93/249 (37%), Positives = 149/249 (59%), Gaps = 11/249 (4%)
Frame = -2
Query: 765 QXPLPVRNEDRYIVLMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVII 586
Q P P + DR+++L+SGL + + +L L ++ ++G G Q + + RVI+
Sbjct: 184 QKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVIL 243
Query: 585 AGGVFANHSDES--VLNESDVIS---------SAELVDSLAAAISGVAPLDIMPGCKDPN 439
AG + + HS +S +N++ ++ + +++D + +S P+D+MPG DP
Sbjct: 244 AGNLLS-HSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPT 302
Query: 438 DVMLPQKPFHYCLFPKATEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQ 259
+ LPQ+P H C+FP AT Y + + V+NPY+ I G+ LGTSG+ V DI RYS++++
Sbjct: 303 NYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHL 362
Query: 258 EVLKKTLEWRHLAPTCPDTVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQR 79
E+L+ TL RH++PT PDT+ C P TDPFI CP +YF GN FG+ + G E Q
Sbjct: 363 EILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQT 422
Query: 78 IRIVSIPDF 52
+ +V++PDF
Sbjct: 423 VLLVTVPDF 431
>AF239710-1|AAG09763.1| 469|Homo sapiens DNA polymerase delta small
subunit protein.
Length = 469
Score = 194 bits (472), Expect = 4e-49
Identities = 93/249 (37%), Positives = 149/249 (59%), Gaps = 11/249 (4%)
Frame = -2
Query: 765 QXPLPVRNEDRYIVLMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVII 586
Q P P + DR+++L+SGL + + +L L ++ ++G G Q + + RVI+
Sbjct: 184 QKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVIL 243
Query: 585 AGGVFANHSDES--VLNESDVIS---------SAELVDSLAAAISGVAPLDIMPGCKDPN 439
AG + + HS +S +N++ ++ + +++D + +S P+D+MPG DP
Sbjct: 244 AGNLLS-HSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPT 302
Query: 438 DVMLPQKPFHYCLFPKATEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQ 259
+ LPQ+P H C+FP AT Y + + V+NPY+ I G+ LGTSG+ V DI RYS++++
Sbjct: 303 NYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHL 362
Query: 258 EVLKKTLEWRHLAPTCPDTVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQR 79
E+L+ TL RH++PT PDT+ C P TDPFI CP +YF GN FG+ + G E Q
Sbjct: 363 EILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQT 422
Query: 78 IRIVSIPDF 52
+ +V++PDF
Sbjct: 423 VLLVTVPDF 431
>BC038451-1|AAH38451.1| 353|Homo sapiens GRAMD2 protein protein.
Length = 353
Score = 31.1 bits (67), Expect = 4.6
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = -2
Query: 321 LGTSGEPVKDIMRYSNLDNSQEVLKKTLEWRHLAP-----TCPDTVPCTP--SVD-TDPF 166
L S + + +S S EVL ++WR + P + PD +PC P SVD TD F
Sbjct: 179 LQPSSKKSLSVREFSGEPESLEVLIPEMKWRKVCPSSRSLSLPDNIPCIPPSSVDSTDSF 238
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,312,852
Number of Sequences: 237096
Number of extensions: 1985976
Number of successful extensions: 4215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4208
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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