Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a15
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical ...    56   3e-08

>AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical
           protein W10D9.5 protein.
          Length = 109

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
 Frame = -2

Query: 891 PECVRNGTYXXXTNTWS--GIKGLYGLSRSVMWVXASSSVILFAPVIFEVERAQVAEMEK 718
           P+ +R+  +   T  WS  G+KG++ L++S +WV +++S+I F P I E ER+ + + + 
Sbjct: 32  PDALRSAVHS--TVDWSIWGVKGVFSLTKSTIWVVSTTSLIAFLPYIIEKERSDLEKTQV 89

Query: 717 SQQKQVLLG 691
           +QQ+Q+LLG
Sbjct: 90  AQQRQMLLG 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,674,820
Number of Sequences: 27780
Number of extensions: 372961
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)