Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a14
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.0  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   5.3  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   5.3  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   7.0  

>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 288 FAPQFQYKYEYILKPCTESCLFTVLIFHLSVFF 190
           F P   ++Y   L+P T  C+  +L+  L +FF
Sbjct: 492 FRPDVNFRYRLDLRPLTIRCVPYILLACLILFF 524


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 418 ITSVKVHRTMKTCTGKIKNMYYGIG 344
           + ++K HR +K+C   IK   +G+G
Sbjct: 129 VLNLKAHRDLKSCFRVIKGGSFGLG 153


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 221 QCLFFIFLCSFVLVKKFKML*NLGF 147
           QC+FF   C+ +++K+F    ++G+
Sbjct: 203 QCVFFTLHCAVLIMKQFSYSHHMGY 227


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 288 FAPQFQYKYEYILKPCTESCLFTVLIFHLSVFFRPSKKV*NAVKFRLFL 142
           F   FQ+  E   KPC+     + +++H SV F  + K  N  K RLFL
Sbjct: 102 FEKDFQFSKEKF-KPCSCQVSLSSVLYHCSVIF--TTKAENFEK-RLFL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,849
Number of Sequences: 5004
Number of extensions: 34782
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)