Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a14
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0318 - 2495617-2497788                                           29   3.1  
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237     27   9.3  

>03_01_0318 - 2495617-2497788
          Length = 723

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 448 EIRL*LIGIAITSVKVHRTMKTCTGKIKNMYYGIGR*ILK 329
           E RL L G+A  + KV RT+    GK+ N++ G+   +L+
Sbjct: 568 EWRLPLRGVAAGATKVLRTIMAEKGKVLNIFLGLAAQMLR 607


>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
          Length = 572

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +2

Query: 263 YLYWN*GANTIASAL-TSIGA 322
           Y+ WN GAN +A+A+ TS+G+
Sbjct: 152 YMAWNIGANDVANAMGTSVGS 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,302
Number of Sequences: 37544
Number of extensions: 175065
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)