Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a14
         (529 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058576-1|AAL13805.1| 1602|Drosophila melanogaster LD27111p pro...    32   0.42 
AE013599-965|AAF58877.2| 1877|Drosophila melanogaster CG30007-PA...    32   0.42 
AE013599-964|AAF58876.2| 1693|Drosophila melanogaster CG30007-PB...    32   0.42 
AY094826-1|AAM11179.1| 1266|Drosophila melanogaster LD39940p pro...    28   9.0  
AE013599-2106|AAF58108.2| 1263|Drosophila melanogaster CG30089-P...    28   9.0  

>AY058576-1|AAL13805.1| 1602|Drosophila melanogaster LD27111p
           protein.
          Length = 1602

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 297 AIVFAPQFQYKYEYILKPCT---ESCLFTVL 214
           A    P+ +YKY Y LKPCT   ++C+ ++L
Sbjct: 291 AFYITPRIRYKYAYKLKPCTSTFKACMLSIL 321


>AE013599-965|AAF58877.2| 1877|Drosophila melanogaster CG30007-PA,
           isoform A protein.
          Length = 1877

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 297 AIVFAPQFQYKYEYILKPCT---ESCLFTVL 214
           A    P+ +YKY Y LKPCT   ++C+ ++L
Sbjct: 291 AFYITPRIRYKYAYKLKPCTSTFKACMLSIL 321


>AE013599-964|AAF58876.2| 1693|Drosophila melanogaster CG30007-PB,
           isoform B protein.
          Length = 1693

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 297 AIVFAPQFQYKYEYILKPCT---ESCLFTVL 214
           A    P+ +YKY Y LKPCT   ++C+ ++L
Sbjct: 291 AFYITPRIRYKYAYKLKPCTSTFKACMLSIL 321


>AY094826-1|AAM11179.1| 1266|Drosophila melanogaster LD39940p
           protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 425 NCYNFSKSTSNYENVY-RKNQKYVLWNRKVNIEIDTL 318
           NCYN S S+SNY  +Y   +   VL   K   E++ L
Sbjct: 430 NCYNSSSSSSNYRPLYDDSSSSSVLRPNKCLAELERL 466


>AE013599-2106|AAF58108.2| 1263|Drosophila melanogaster CG30089-PA
           protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 425 NCYNFSKSTSNYENVY-RKNQKYVLWNRKVNIEIDTL 318
           NCYN S S+SNY  +Y   +   VL   K   E++ L
Sbjct: 430 NCYNSSSSSSNYRPLYDDSSSSSVLRPNKCLAELERL 466


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,082
Number of Sequences: 53049
Number of extensions: 332581
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)