Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a14
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U14635-11|AAK84494.2|  500|Caenorhabditis elegans Glutamate-gate...    27   8.3  

>U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical
           protein F48C1.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -3

Query: 428 WNCYNFSKSTSNYENVYRKNQ 366
           W  Y+ +KS++NYE++ R+N+
Sbjct: 121 WKKYDLAKSSTNYEDIRRQNR 141


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 221 VKRHDSVQGFSMYSYLYWN*GANTIASALTSIGAY 325
           VKR D    FS Y YL +   AN   S +  +GA+
Sbjct: 258 VKRRDLAHNFSPYFYLLYLYEANPTMSQIIGLGAF 292


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -1

Query: 502 FKNIFFITFIHSRGPAVVEIRL*LIGIAITSVKVHRTMKTCTGKIKNMYYGIGR*ILK 329
           F +I F +F  + GP +V  +L  +G AI +V V RT+    GK+ ++    G  +L+
Sbjct: 242 FSSISFFSF-QNIGPYIVVAKL--LGCAIEAVLVSRTLIKKNGKLNSISSRSGAGVLE 296


>U14635-11|AAK84494.2|  500|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 4 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 HSILNFFTRTKEHRKMKNKHCEETRLS 240
           ++++N+     EHR+MK   C  +RLS
Sbjct: 345 YAVVNYVGILDEHRQMKKAACNRSRLS 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,334
Number of Sequences: 27780
Number of extensions: 192634
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)