Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a13
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 160 2e-40
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 31 0.22
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 30 0.29
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 29 0.51
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 27 3.6
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 3.6
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 26 4.8
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 6.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.4
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 8.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.4
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.4
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 160 bits (389), Expect = 2e-40
Identities = 86/214 (40%), Positives = 130/214 (60%), Gaps = 1/214 (0%)
Frame = -2
Query: 727 TPPEDDPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSRGILQR 551
T ++ K L V +SD+GLCG +H+ +S++IR L +P EN + +G+K R L R
Sbjct: 88 TKAPEEGKTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLR 147
Query: 550 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPL 371
+ IG P+F +A Q+++ IL ++ ++YNKF S VS+ L
Sbjct: 148 FCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNL 207
Query: 370 YTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKN 191
YT K+I + L+AY+ D +V Q EF+ A+ +F A+ E CSE SSR AM+NASK+
Sbjct: 208 YTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKS 266
Query: 190 AGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 89
AG+MI+K ++ +NR RQA IT ELI+I++GA +L
Sbjct: 267 AGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 30.7 bits (66), Expect = 0.22
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -2
Query: 481 SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 302
S+ + IL + +FGS KII K +V S L + +I L +L +D+
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515
Query: 301 QSY-TEFSLASLLFYALKEGACSEQSSRMTAM 209
QS+ +L L ++ + Q SR A+
Sbjct: 2516 QSFGNAKNLVEALKVNIEAPPSTSQDSRRLAL 2547
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.3 bits (65), Expect = 0.29
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = -2
Query: 724 PPEDD-PKQLFVXMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 560
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 559 LQRLYGKHIISVA 521
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 29.5 bits (63), Expect = 0.51
Identities = 25/126 (19%), Positives = 51/126 (40%)
Frame = -2
Query: 478 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQ 299
+L A+ + + I+N+FKS+ + Q P + + + + D L+
Sbjct: 53 ELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLK 112
Query: 298 SYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITREL 119
S E +++ L+ KE A + + K G ++ L F+ R V+ +
Sbjct: 113 SIAEATISGLI--PTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170
Query: 118 IEIISG 101
+ I +G
Sbjct: 171 LSIRNG 176
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 254 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 337
+R+EQ+R Q+E + L+ QR++RS+
Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 3.6
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Frame = -2
Query: 370 YTKKSIES-ASKLTAYDSL--DSDVLQSYT--EFSLASLLFYALKEGACSEQSSRMTAMD 206
YT K+ E A L+ +++ ++++L +T E +LAS +++ + GA + ++A
Sbjct: 100 YTAKTKEDFAYLLSQLETIFKENEILNEFTPVEVALASDIYFCVLNGAPVREYPLLSAWY 159
Query: 205 NASKNAGEMIDKLTLTFNRT--RQAVITRELIEI 110
+ + L LTF +T + AV + E I +
Sbjct: 160 LKIEKQKPFVQALKLTFEKTLGQPAVTSTEKIPV 193
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 549 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 421
C ++L L +S++ LS + +PL + RDT L+ +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 316 DSDVLQSYTEFSLASLLFYALKEGACSEQ 230
D D+ Q Y ++ASLL ++L + CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 6.3
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = -2
Query: 451 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLAS 272
G + + I +++F+ V ++S P TKK ASK + D+L + ++ E + +
Sbjct: 257 GIKKANADIDFDEFEKAVLSSES-AP--TKKPAAVASKESTVDTLVDNGVEEVKESTSTT 313
Query: 271 LLFYALKEGACSEQSSRMTAMDNASKNA 188
+ +K S S++ T D+++ NA
Sbjct: 314 VQGKPVKPVLKSAASAKSTKSDDSNLNA 341
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 605 STRFAETVADHFGYTSVYSSAQTSVR--GHXNKQLLGVIFG 721
ST+F+ A + GY +Y+ Q++V N Q+ V FG
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFG 149
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 464 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 616
SS ++ V + W + L +TND +++S+ DT R S DV+ F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.4
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = -3
Query: 633 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 454
S+ S++ + +S S + S + +TS L S S L+ + ++ L+S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142
Query: 453 RDTSLVPERSFTTSSSLWSRTPSPT 379
TS S TTSSSL S + + T
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNST 167
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 473 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 646
+L + ES+++T+ +T + + D R+I D D + +ET+A F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 605 STRFAETVADHFGYTSVYSSAQTSVR--GHXNKQLLGVIFG 721
ST+F+ A + GY +Y+ Q++V N Q+ V FG
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFG 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,279
Number of Sequences: 5004
Number of extensions: 49292
Number of successful extensions: 175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -