Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a13
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 122 4e-28
07_03_0571 - 19602755-19603831 61 9e-13
07_03_1697 - 28795521-28797328,28797430-28797550 31 0.71
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 29 2.9
07_01_0696 - 5261008-5263128 29 5.0
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 122 bits (293), Expect = 4e-28
Identities = 86/257 (33%), Positives = 140/257 (54%), Gaps = 44/257 (17%)
Frame = -2
Query: 724 PPEDDPKQLFVXMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQ 554
P D K + V +TSD+GLCG +++ VSK + S P E+ K + +G+K + L
Sbjct: 112 PSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLI 170
Query: 553 RLYGKHIISVANEIGRLPPTF-------------LDASQLATAILTS------------- 452
R +I +E+ + P + + ++L +A+L +
Sbjct: 171 RDSKDNIEMTVSELQKNPINYTQDKEWHWWWRKVVQLAELVSAVLITLQQKFTDVIAVLA 230
Query: 451 -----GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLD--------- 314
E+ + ++++NKF SV+S+ + + + + +E S+ LD
Sbjct: 231 DDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGET 290
Query: 313 -SDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQA 137
S++LQ+ TEF + +++ A E ACSE +RM+AMD++S+NAGEM+D+LTLT+NRTRQA
Sbjct: 291 KSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQA 350
Query: 136 VITRELIEIISGAAALD 86
IT ELIEIISGA+AL+
Sbjct: 351 SITTELIEIISGASALE 367
>07_03_0571 - 19602755-19603831
Length = 358
Score = 60.9 bits (141), Expect(2) = 9e-13
Identities = 32/85 (37%), Positives = 52/85 (61%)
Frame = -2
Query: 343 SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 164
S + ++ +L + L S + AL+E SE ++RM+AM +A+ NA E+ L+
Sbjct: 273 SPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLS 332
Query: 163 LTFNRTRQAVITRELIEIISGAAAL 89
+ +NR RQA IT E++EI++GA AL
Sbjct: 333 MVYNRQRQAKITGEILEIVAGADAL 357
Score = 30.3 bits (65), Expect(2) = 9e-13
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Frame = -2
Query: 706 KQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQRLYGKHI 533
K V +T +RGLCG+ + V K R+ E ++ V+ VG K R +
Sbjct: 111 KVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR---RPF 167
Query: 532 ISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFKSVV---SYAQSDLP 374
I E+ + PT D+ + + + K+ +Y+KF S+V Q+ LP
Sbjct: 168 IPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFVSLVRSDPIIQTLLP 226
Query: 373 LYTKKSI 353
+ K I
Sbjct: 227 MSPKGEI 233
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 344 GALNRLLSVEGQVGLGVRDHRLELVVNDLSGTK-LVSRGEDSSGQLTCVQESRWETSDLI 520
G ++S +G G+ H L +D++ T + SSGQ SR ET DL+
Sbjct: 46 GNSQEVISAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRRETDDLV 105
Query: 521 SNTND 535
S N+
Sbjct: 106 SARNN 110
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 555 RDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPR-DTSLVPERSFTTSSSLWSRTPSPT 379
R E+T+ M SD+ T SWP+L + R T R F T ++ W + P+
Sbjct: 420 RRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVTYATSWKTSCGPS 479
>07_01_0696 - 5261008-5263128
Length = 706
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 322 SLDSDVLQSYTEFSLASLLFYALKEGAC 239
S+D D LQS+ AS LF +L +G+C
Sbjct: 429 SIDEDELQSFVPEFAASNLFVSLPQGSC 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,018
Number of Sequences: 37544
Number of extensions: 357528
Number of successful extensions: 1110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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