Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a13
(728 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113454-1|AAM29459.1| 297|Drosophila melanogaster RE35715p pro... 316 2e-86
AE014297-4433|AAN14186.1| 297|Drosophila melanogaster CG7610-PC... 316 2e-86
AE014297-4432|AAF56932.1| 297|Drosophila melanogaster CG7610-PB... 316 2e-86
AE014297-4431|AAN14185.1| 297|Drosophila melanogaster CG7610-PA... 316 2e-86
Y12701-1|CAA73233.1| 169|Drosophila melanogaster ATP synthase, ... 120 2e-27
AE013599-3476|AAF46906.3| 271|Drosophila melanogaster CG30266-P... 33 0.40
BT023123-1|AAY55539.1| 572|Drosophila melanogaster IP10857p pro... 30 2.8
BT023067-1|AAY55483.1| 572|Drosophila melanogaster IP10957p pro... 30 2.8
BT022975-1|AAY55391.1| 572|Drosophila melanogaster IP11157p pro... 30 2.8
AY051973-1|AAK93397.1| 316|Drosophila melanogaster LD43650p pro... 30 3.7
AF176011-1|AAD52649.1| 316|Drosophila melanogaster mitochondria... 30 3.7
AE014296-29|AAN11421.1| 316|Drosophila melanogaster CG6851-PC, ... 30 3.7
AE014296-28|AAN11420.1| 316|Drosophila melanogaster CG6851-PB, ... 30 3.7
AE014296-27|AAF47342.1| 316|Drosophila melanogaster CG6851-PA, ... 30 3.7
>AY113454-1|AAM29459.1| 297|Drosophila melanogaster RE35715p
protein.
Length = 297
Score = 316 bits (777), Expect = 2e-86
Identities = 150/208 (72%), Positives = 180/208 (86%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHI 533
+PK+L + +TSDRGLCGAVHTGV+++IR L++ A N KV CVGDKSR IL RLYGK+I
Sbjct: 90 EPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGDKSRAILSRLYGKNI 148
Query: 532 ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSI 353
+ VANE+GRLPPTFLDAS++A +L +GY++ GKI+YN+FKSVVSY S LP+++ ++
Sbjct: 149 LMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTV 208
Query: 352 ESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 173
E + KL YDSLDSDV++SY EFSLASL+FY +KEGACSEQSSRMTAMDNASKNAGEMID
Sbjct: 209 EKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMID 268
Query: 172 KLTLTFNRTRQAVITRELIEIISGAAAL 89
KLTLTFNRTRQAVITRELIEIISGAAAL
Sbjct: 269 KLTLTFNRTRQAVITRELIEIISGAAAL 296
>AE014297-4433|AAN14186.1| 297|Drosophila melanogaster CG7610-PC,
isoform C protein.
Length = 297
Score = 316 bits (777), Expect = 2e-86
Identities = 150/208 (72%), Positives = 180/208 (86%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHI 533
+PK+L + +TSDRGLCGAVHTGV+++IR L++ A N KV CVGDKSR IL RLYGK+I
Sbjct: 90 EPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGDKSRAILSRLYGKNI 148
Query: 532 ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSI 353
+ VANE+GRLPPTFLDAS++A +L +GY++ GKI+YN+FKSVVSY S LP+++ ++
Sbjct: 149 LMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTV 208
Query: 352 ESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 173
E + KL YDSLDSDV++SY EFSLASL+FY +KEGACSEQSSRMTAMDNASKNAGEMID
Sbjct: 209 EKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMID 268
Query: 172 KLTLTFNRTRQAVITRELIEIISGAAAL 89
KLTLTFNRTRQAVITRELIEIISGAAAL
Sbjct: 269 KLTLTFNRTRQAVITRELIEIISGAAAL 296
>AE014297-4432|AAF56932.1| 297|Drosophila melanogaster CG7610-PB,
isoform B protein.
Length = 297
Score = 316 bits (777), Expect = 2e-86
Identities = 150/208 (72%), Positives = 180/208 (86%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHI 533
+PK+L + +TSDRGLCGAVHTGV+++IR L++ A N KV CVGDKSR IL RLYGK+I
Sbjct: 90 EPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGDKSRAILSRLYGKNI 148
Query: 532 ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSI 353
+ VANE+GRLPPTFLDAS++A +L +GY++ GKI+YN+FKSVVSY S LP+++ ++
Sbjct: 149 LMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTV 208
Query: 352 ESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 173
E + KL YDSLDSDV++SY EFSLASL+FY +KEGACSEQSSRMTAMDNASKNAGEMID
Sbjct: 209 EKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMID 268
Query: 172 KLTLTFNRTRQAVITRELIEIISGAAAL 89
KLTLTFNRTRQAVITRELIEIISGAAAL
Sbjct: 269 KLTLTFNRTRQAVITRELIEIISGAAAL 296
>AE014297-4431|AAN14185.1| 297|Drosophila melanogaster CG7610-PA,
isoform A protein.
Length = 297
Score = 316 bits (777), Expect = 2e-86
Identities = 150/208 (72%), Positives = 180/208 (86%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHI 533
+PK+L + +TSDRGLCGAVHTGV+++IR L++ A N KV CVGDKSR IL RLYGK+I
Sbjct: 90 EPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGDKSRAILSRLYGKNI 148
Query: 532 ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSI 353
+ VANE+GRLPPTFLDAS++A +L +GY++ GKI+YN+FKSVVSY S LP+++ ++
Sbjct: 149 LMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTV 208
Query: 352 ESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 173
E + KL YDSLDSDV++SY EFSLASL+FY +KEGACSEQSSRMTAMDNASKNAGEMID
Sbjct: 209 EKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMID 268
Query: 172 KLTLTFNRTRQAVITRELIEIISGAAAL 89
KLTLTFNRTRQAVITRELIEIISGAAAL
Sbjct: 269 KLTLTFNRTRQAVITRELIEIISGAAAL 296
>Y12701-1|CAA73233.1| 169|Drosophila melanogaster ATP synthase,
gamma subunit protein.
Length = 169
Score = 120 bits (289), Expect = 2e-27
Identities = 55/81 (67%), Positives = 69/81 (85%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHI 533
+PK+L + +TSDRGLCGAVHTGV+++IR L++ A N KV CVGDKSR IL RLYGK+I
Sbjct: 90 EPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGDKSRAILSRLYGKNI 148
Query: 532 ISVANEIGRLPPTFLDASQLA 470
+ VANE+GRLPPTFLDAS++A
Sbjct: 149 LMVANEVGRLPPTFLDASKIA 169
>AE013599-3476|AAF46906.3| 271|Drosophila melanogaster CG30266-PA
protein.
Length = 271
Score = 33.1 bits (72), Expect = 0.40
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 8/143 (5%)
Frame = +2
Query: 302 EHVAVQRVVRS-QLAGALNRLLSVEGQ--VGLGVRDHRLELVVNDL-SGTKLVSRGEDSS 469
E+ ++R+V S L +L+ EG VGL + ++ +N++ S + + R D++
Sbjct: 24 ENERIKRIVESGDLEQLAEIVLNGEGGSLVGLKSPEPEIQAFLNNVPSYMEKIHRVHDAA 83
Query: 470 --GQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAE--TVADH 637
G L +Q++ I+ + + + A HTD + L++RF E T+ D+
Sbjct: 84 RDGGLLALQQALDRRKFAIAKNDISPNGSTPLHVAVLFGHTDIVRYLASRFPETMTITDN 143
Query: 638 FGYTSVYSSAQTSVRGHXNKQLL 706
G T ++ +A GH LL
Sbjct: 144 DGRTPLHYAATIKDNGHFYNMLL 166
>BT023123-1|AAY55539.1| 572|Drosophila melanogaster IP10857p
protein.
Length = 572
Score = 30.3 bits (65), Expect = 2.8
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = +2
Query: 380 VGLGVRDHRLELVVNDL-SGTKLVSRGEDSS--GQLTCVQESRWETSDLISNTNDVLSVQ 550
VGL + ++ +N++ S + + R D++ G L +Q++ I+ + +
Sbjct: 23 VGLKSPEPEIQAFLNNVPSYMEKIHRVHDAARDGGLLALQQALDRRKFAIAKNDISPNGS 82
Query: 551 SLQDTARFISHTDHLDVLSTRFAE--TVADHFGYTSVYSSAQTSVRGHXNKQLL 706
+ A HTD + L++RF E T+ D+ G T ++ +A GH LL
Sbjct: 83 TPLHVAVLFGHTDIVRYLASRFPETMTITDNDGRTPLHYAATIKDNGHFYNMLL 136
>BT023067-1|AAY55483.1| 572|Drosophila melanogaster IP10957p
protein.
Length = 572
Score = 30.3 bits (65), Expect = 2.8
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = +2
Query: 380 VGLGVRDHRLELVVNDL-SGTKLVSRGEDSS--GQLTCVQESRWETSDLISNTNDVLSVQ 550
VGL + ++ +N++ S + + R D++ G L +Q++ I+ + +
Sbjct: 23 VGLKSPEPEIQAFLNNVPSYMEKIHRVHDAARDGGLLALQQALDRRKFAIAKNDISPNGS 82
Query: 551 SLQDTARFISHTDHLDVLSTRFAE--TVADHFGYTSVYSSAQTSVRGHXNKQLL 706
+ A HTD + L++RF E T+ D+ G T ++ +A GH LL
Sbjct: 83 TPLHVAVLFGHTDIVRYLASRFPETMTITDNDGRTPLHYAATIKDNGHFYNMLL 136
>BT022975-1|AAY55391.1| 572|Drosophila melanogaster IP11157p
protein.
Length = 572
Score = 30.3 bits (65), Expect = 2.8
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = +2
Query: 380 VGLGVRDHRLELVVNDL-SGTKLVSRGEDSS--GQLTCVQESRWETSDLISNTNDVLSVQ 550
VGL + ++ +N++ S + + R D++ G L +Q++ I+ + +
Sbjct: 23 VGLKSPEPEIQAFLNNVPSYMEKIHRVHDAARDGGLLALQQALDRRKFAIAKNDISPNGS 82
Query: 551 SLQDTARFISHTDHLDVLSTRFAE--TVADHFGYTSVYSSAQTSVRGHXNKQLL 706
+ A HTD + L++RF E T+ D+ G T ++ +A GH LL
Sbjct: 83 TPLHVAVLFGHTDIVRYLASRFPETMTITDNDGRTPLHYAATIKDNGHFYNMLL 136
>AY051973-1|AAK93397.1| 316|Drosophila melanogaster LD43650p
protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -2
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP--LYT 365
H+IS+ R+ F+ L T+I+ S E + I F +V DL + +
Sbjct: 153 HVISL-----RMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGDLACLVLS 207
Query: 364 KKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS-SRMTA 212
+I +K D L +T+F+++SLL+ CS S SR+ A
Sbjct: 208 SSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCSAVSGSRLMA 259
>AF176011-1|AAD52649.1| 316|Drosophila melanogaster mitochondrial
carrier homolog protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -2
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP--LYT 365
H+IS+ R+ F+ L T+I+ S E + I F +V DL + +
Sbjct: 153 HVISL-----RMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGDLACLVLS 207
Query: 364 KKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS-SRMTA 212
+I +K D L +T+F+++SLL+ CS S SR+ A
Sbjct: 208 SSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCSAVSGSRLMA 259
>AE014296-29|AAN11421.1| 316|Drosophila melanogaster CG6851-PC,
isoform C protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -2
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP--LYT 365
H+IS+ R+ F+ L T+I+ S E + I F +V DL + +
Sbjct: 153 HVISL-----RMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGDLACLVLS 207
Query: 364 KKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS-SRMTA 212
+I +K D L +T+F+++SLL+ CS S SR+ A
Sbjct: 208 SSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCSAVSGSRLMA 259
>AE014296-28|AAN11420.1| 316|Drosophila melanogaster CG6851-PB,
isoform B protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -2
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP--LYT 365
H+IS+ R+ F+ L T+I+ S E + I F +V DL + +
Sbjct: 153 HVISL-----RMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGDLACLVLS 207
Query: 364 KKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS-SRMTA 212
+I +K D L +T+F+++SLL+ CS S SR+ A
Sbjct: 208 SSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCSAVSGSRLMA 259
>AE014296-27|AAF47342.1| 316|Drosophila melanogaster CG6851-PA,
isoform A protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -2
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP--LYT 365
H+IS+ R+ F+ L T+I+ S E + I F +V DL + +
Sbjct: 153 HVISL-----RMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGDLACLVLS 207
Query: 364 KKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS-SRMTA 212
+I +K D L +T+F+++SLL+ CS S SR+ A
Sbjct: 208 SSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCSAVSGSRLMA 259
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,042,614
Number of Sequences: 53049
Number of extensions: 594558
Number of successful extensions: 1821
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -