Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a13
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 261 3e-70
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 177 7e-45
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 95 3e-20
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 32 0.37
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.4
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 29 4.5
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 29 4.5
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 29 4.5
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 29 4.5
Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 261 bits (640), Expect = 3e-70
Identities = 127/210 (60%), Positives = 160/210 (76%)
Frame = -2
Query: 718 EDDPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 539
++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKSR LQRLY
Sbjct: 90 QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKK 359
I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+VVSY S L + +
Sbjct: 150 SILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLE 209
Query: 358 SIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEM 179
+I++ L+ YDS+D DVLQSY+E+SLA L++Y +KE A SEQSSRMTAMD ASKNAGEM
Sbjct: 210 AIKAKEALSTYDSVDDDVLQSYSEYSLAQLIYYGMKESATSEQSSRMTAMDGASKNAGEM 269
Query: 178 IDKLTLTFNRTRQAVITRELIEIISGAAAL 89
IDKLTL FNRTRQAVITRELIEIISGAA +
Sbjct: 270 IDKLTLAFNRTRQAVITRELIEIISGAACV 299
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 177 bits (431), Expect = 7e-45
Identities = 83/162 (51%), Positives = 115/162 (70%)
Frame = -2
Query: 718 EDDPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 539
++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKSR LQRLY
Sbjct: 90 QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149
Query: 538 HIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKK 359
I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+VVSY S L + +
Sbjct: 150 SILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLE 209
Query: 358 SIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSE 233
+I++ L+ YDS+D DVLQSY+E+SLA L++Y +KE A SE
Sbjct: 210 AIKAKEALSTYDSVDDDVLQSYSEYSLAQLIYYGMKESATSE 251
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = -2
Query: 718 EDDPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 539
++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKSR LQRLY
Sbjct: 90 QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149
Query: 538 HIISVANEIGRLPPTFLDASQLATAIL 458
I+ NEIGR PP+F DAS A AIL
Sbjct: 150 SILLSGNEIGRAPPSFADASIAAKAIL 176
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 460 LTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL-TAYDSLDSDVLQSYTEF 284
+ GYEFGS +I N+ + ++ + ++ + + SK A + SD LQ YT
Sbjct: 482 IVGGYEFGSDEIDKNRMEINIAENRVNIARHHRPLTRQPSKFHEATQPIISDSLQKYTHL 541
Query: 283 SLASLLFYAL 254
L+F ++
Sbjct: 542 MTTPLVFVSV 551
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 460 LTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL-TAYDSLDSDVLQSYTEF 284
+ GYEFGS +I N+ + ++ + ++ + + SK A + SD LQ YT
Sbjct: 482 IVGGYEFGSDEIDKNRMEINIAENRVNIARHHRPLTRQPSKFHEATQPIISDSLQKYTHL 541
Query: 283 SLASLLFYAL 254
L+F ++
Sbjct: 542 MTTPLVFVSV 551
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 432 ERSFTTSSSLWSRTPSPTCP 373
E T S+SLW+ TP P CP
Sbjct: 124 EFDITVSNSLWTFTPVPACP 143
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 485 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 646
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 485 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 646
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 500 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 673
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 674 SVRGHXNK 697
V H NK
Sbjct: 131 LVAKHSNK 138
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 500 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 673
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 674 SVRGHXNK 697
V H NK
Sbjct: 131 LVAKHSNK 138
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -2
Query: 589 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATA 464
+CV D G R K SV I LPPT L + QLATA
Sbjct: 75 LCVFDIDTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATA 116
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -2
Query: 589 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATA 464
+CV D G R K SV I LPPT L + QLATA
Sbjct: 75 LCVFDIDTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATA 116
>Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical
protein C54G4.2 protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 467 SGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISH 583
S +T ES +TSDLIS+ D + +F+SH
Sbjct: 64 SASITPSTESTMKTSDLISSIGDHTEGEPSNGNTKFVSH 102
>U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical
protein C10G6.1b protein.
Length = 569
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 599
+PK+L + +RGL VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical
protein C10G6.1a protein.
Length = 574
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 712 DPKQLFVXMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 599
+PK+L + +RGL VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 502 PPTFLDASQLATAILTSGYEFGSGKI 425
PPTF D + A + GY FG KI
Sbjct: 3 PPTFADLGKSAKDLFNKGYNFGFLKI 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,670
Number of Sequences: 27780
Number of extensions: 286196
Number of successful extensions: 930
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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