Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a12
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-2|AAB52965.2|  382|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U58748-2|AAB52965.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK180.1 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 476 IY*ILTCILMSRYL--DKKHFIIGHIPLFYNIY*YSCIIHTNKFV*SFIKALTQSPYIP 306
           ++ I T I M R    D K FII  I LF +I    C++ T  FV  F   +T+ P+IP
Sbjct: 166 VHSIFTNIRMDRKAIKDSKLFIILGILLFIDI----CVLVTWAFVSPFSYTVTELPHIP 220


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 88  ERLNSRIHLIQIMLHNIKN-KSNKIQQ 165
           + LNS+  ++++M+H+IK+ K+ KI +
Sbjct: 121 QELNSKTEMVELMIHSIKHVKTRKINE 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,786,926
Number of Sequences: 27780
Number of extensions: 225146
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)