Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a11
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 31 0.17
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 3.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 4.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 6.2
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 6.2
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 8.2
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 8.2
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 31.1 bits (67), Expect = 0.17
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 585 VAEVLAELMALTACDTALSILLAASNS--KRHNSHCAADD 698
VAEVL +L+ + CDT I L NS R N H A D
Sbjct: 524 VAEVLEKLLTVGICDTVPDIRLTVLNSLDSRFNKHLAQAD 563
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = -2
Query: 481 SSPVSHI*QFISRCLSSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINANGACHY 302
SSP S + S SSS S S + +++++SS S SK + + +
Sbjct: 163 SSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFS 222
Query: 301 SFSYNHEKTAVSKSSRG 251
S S+ T S SS G
Sbjct: 223 SSSFITSTTPASSSSSG 239
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = -3
Query: 222 LFPDDLIDKIVESHDKKLKLLYLSPHRDEY----PSILSLARNIHNADGVREPHSTRKQX 55
+ P ++K E HD K L + H D Y PSI++L H + + K+
Sbjct: 182 VLPKVAVEKFYECHDLSKKFLIETLHSDIYFLHSPSIIALGAIYHTNPTICLQYIEAKKI 241
Query: 54 LEDETLVLN 28
E + L+++
Sbjct: 242 PELQPLIIS 250
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 454 FISRCLSSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQI 326
F +C++ S RP+ + E TT+++ KK S E+ Q+
Sbjct: 195 FTLQCINESVRPQSTKVKEEATTSSKGKDEEKKVSTVEQRTQL 237
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 436 SSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINANGACHYSF 296
SS SY+ A T+TT SSVS ++ S +A SF
Sbjct: 739 SSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPSSAISTAKSSF 785
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 415 DSYSFAEKTTTTESSVSRKKGSKGEKERQINANGACHYSFSYNHEKTAVSKS 260
+ Y ++ T+ ESSV K K + IN N H + + + +S +
Sbjct: 1129 EDYYLSQSTSKLESSVEGKNYLLKVKFKDINVNWDLHDGYDWEATRATISSA 1180
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 436 SSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKER 332
SS+ KDS S A T+ + S+ + + EKER
Sbjct: 108 SSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKER 142
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 436 SSSRRPKDSYSFAEKTTTT--ESSVS-RKKGSKGEKERQINANGACHYSFSYNHEKTAVS 266
SS K S + AE E VS RKK K K+ ++ + A S + + +KT
Sbjct: 198 SSQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQASENASDKKTKEK 257
Query: 265 KSSRGQQ 245
KSS Q+
Sbjct: 258 KSSGKQK 264
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 454 FISRCLSSSRRPKDSYSFAEKTTTTESSVS 365
F S+ L ++ KDS+SF ++T S+ S
Sbjct: 183 FYSKQLDTTSETKDSFSFCKETLPRSSTTS 212
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 8.2
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -3
Query: 321 QTEPVIIRSPITMKKLQSPNHQEANNRTQIPIKLFPDDL-IDKIVESHDKKLKLLYLSPH 145
QT P++ SP T SP + N T+ P DL +DK+ + H+K YL
Sbjct: 97 QTSPIV--SPTT-----SPKQTPSINVTE------PQDLELDKVSQDHEKDQSNTYLMED 143
Query: 144 RDEYPSILSLAR 109
E+P L R
Sbjct: 144 GYEFPLTRDLIR 155
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 282 KKLQSPNHQEANNRTQIPIKLFPDDLIDKIVESHDKKLKLLYLSPHRDEYPSI 124
+KL PN ++A +R IP+ I VE+ K L+L P R PS+
Sbjct: 264 RKLHEPNAEDAPSRDYIPLPPHKGVDILSEVEAVKDWSKRLHLGP-RASLPSV 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,034
Number of Sequences: 5004
Number of extensions: 59301
Number of successful extensions: 230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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