Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a11
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0749 - 22758317-22760407 31 1.2
11_01_0556 + 4390000-4390431 30 1.6
10_08_0931 - 21647562-21649037 30 2.1
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 30 2.1
08_02_1483 - 27451391-27451794,27451883-27452387 29 2.8
04_04_0036 - 22307328-22308026 29 2.8
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 29 2.8
01_06_1503 + 37813854-37813917,37814035-37814073,37814766-378149... 29 3.7
12_02_1199 + 26928685-26929671 29 4.9
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 29 4.9
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 29 4.9
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484... 28 6.5
11_05_0043 - 18561039-18562114,18562338-18562503 28 6.5
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 28 6.5
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 28 6.5
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 28 6.5
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381... 28 6.5
12_02_0377 + 18342631-18342675,18343654-18343771,18344233-183443... 28 8.6
11_04_0368 + 16877080-16877496,16879424-16879708 28 8.6
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 8.6
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 28 8.6
>12_02_0749 - 22758317-22760407
Length = 696
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = -3
Query: 639 KARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHTY 460
+ RCRRLS + +P PP+ SL + + + + S ++ DW PRL +
Sbjct: 14 RRRCRRLSGANRRPETPPR--SSLSTKSAANPPDPADPARA-ASILAEDDW-FPRLNAEF 69
Query: 459 SNLSPAASPRHDDRRIRTASPKK 391
+ P PR R +R A+ ++
Sbjct: 70 AAALPRLGPRFVVRALRAAAERE 92
>11_01_0556 + 4390000-4390431
Length = 143
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 633 RCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKY 493
R R+L TPSA P+PP M P P R+ GE + + S Y
Sbjct: 46 RLRQLVTPSAPPLPPETMNP------PPRRQLTGEFVDVELGNASLY 86
>10_08_0931 - 21647562-21649037
Length = 491
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 642 SKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHT 463
S+ R S+P A P PPP L R+ +S K + ++ + + +
Sbjct: 262 SRRRSPYKSSPPAPPPPPPPFLVHGYHPPAAERRTAAKSFKEELQEQTSHSFTTSEFSRS 321
Query: 462 YSNLSPAASPR 430
SN S +A PR
Sbjct: 322 SSN-SSSAKPR 331
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 663 CSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQL 562
CS TV+ R R+ P+PPP +P+L +
Sbjct: 250 CSSSDTVTTPRNRKPELSKLPPIPPPPPMPALSV 283
>08_02_1483 - 27451391-27451794,27451883-27452387
Length = 302
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 451 ISRCLSSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEK 338
++ SS+RP+DS + A TT T SS +++ GE+
Sbjct: 142 LASAAESSKRPRDSAAAATSTTPTTSSGEQQQMMVGER 179
>04_04_0036 - 22307328-22308026
Length = 232
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 693 RRRNVNCAA-CC--SRQPTVSKARCRRLSTPSAQPVPPPQ 583
R+RN C A CC SR S A C + Q +PPPQ
Sbjct: 40 RQRNGRCRALCCGASRLSVSSSASCSSVEYAVEQRLPPPQ 79
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 672 AACCSRQPTVSKARCRRLS-TPSAQPVPPPQMLPSLQL 562
+A C +P ++ RR P ++P+PPP LPS L
Sbjct: 550 SAACFLEPLTNRRLTRRCRHRPPSKPLPPPPPLPSKPL 587
>01_06_1503 +
37813854-37813917,37814035-37814073,37814766-37814983,
37815629-37815684,37816787-37816850,37818796-37819163,
37819251-37820028
Length = 528
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 503 NQSTTGGFLACVTHIAIYLPLPLLVT 426
N S T GF AC+ A+YLP+ LL T
Sbjct: 202 NVSWTVGFAACLATTAVYLPVFLLGT 227
>12_02_1199 + 26928685-26929671
Length = 328
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 234 IPIKL-FPDDLIDKIVESHDKKLKLLYLSPHRDEYPSILSLARNIHNADGVREPHSTRKQ 58
+P++ FP L D +V++HD+ L R P+ + ++ AD V P + ++
Sbjct: 29 LPVQTGFPTSLADLLVKNHDRLLLTKPRRRRRPTPPTTTTATASVAAAD-VETPLPSGRE 87
Query: 57 XLEDE 43
LE+E
Sbjct: 88 ELEEE 92
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 528 ILLYIYDVSALSAVGTAASVAEVLAELM--ALTACDTALSILL 650
+LL+ VSAL+ +G S+AEV+++L +T+ + L I+L
Sbjct: 271 LLLFAGSVSALAYLGPKESIAEVISDLKLDIITSLRSRLDIIL 313
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 528 ILLYIYDVSALSAVGTAASVAEVLAELM--ALTACDTALSILL 650
+LL+ VSAL+ +G S+AEV+++L +T+ + L I+L
Sbjct: 170 LLLFAGSVSALAYLGPKESIAEVISDLKLDIITSLRSRLDIIL 212
>12_01_0591 -
4835894-4836328,4836343-4837882,4838911-4839050,
4840051-4840605
Length = 889
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +2
Query: 485 LQSYF---DFDEICVFCDSPLHLRCLGVVSCR 571
L S+F FD + C SP HLR L + CR
Sbjct: 697 LDSHFILVSFDRLSDLCPSPRHLRRLNLYGCR 728
>11_05_0043 - 18561039-18562114,18562338-18562503
Length = 413
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Frame = +3
Query: 363 RDTLDSVVVVFSAKLYESFGRRDEERQREI---NCYMCDTGEEPSSRTLISMKYVFFAIL 533
RD + + + +A+ +GR + + N G + L+ ++ +
Sbjct: 95 RDAVPELAMAAAARAIAEWGRPAADITHLVVSTNAGAHAPGADARLAELLGLRATVQRTV 154
Query: 534 LYIYDVSA-LSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAA 692
LY++ SA SA+ A +AE L AC I LAA + R ++ AA
Sbjct: 155 LYMHGCSAGCSALRLAKDIAESNRRARVLVACAEVFLIALAAPDEARLDALVAA 208
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 651 PTVSKARCRRLSTPSAQPVPPPQMLPSL 568
PT + A+ TP QP PPP PSL
Sbjct: 266 PTSASAQRATYGTPLLQPFPPPTPPPSL 293
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 618 STPSAQPVPPPQMLPSLQLTTP 553
S P A P PPPQ P QL P
Sbjct: 60 SPPKASPTPPPQPQPHPQLQPP 81
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 669 ACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPS 571
+C P + + S P+A P P P+M PS
Sbjct: 363 SCSLSSPPAAPPKMAAASPPAAAPAPAPEMAPS 395
>04_04_0760 -
27837170-27837328,27837441-27837504,27837812-27838160,
27838906-27838960,27839489-27839821
Length = 319
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 618 STPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHTYSNLSPAA 439
STP++ P PPP P+ P+ RK E H S V L + +SP +
Sbjct: 19 STPTSDPKPPPPP-PTSSTAAPKKRKL--EEVGFHHSPYYNIRAAVANLRGRFIQVSPTS 75
Query: 438 SPR 430
+P+
Sbjct: 76 NPK 78
>12_02_0377 +
18342631-18342675,18343654-18343771,18344233-18344380,
18345142-18345220,18345330-18345449,18346112-18346285,
18346424-18346525
Length = 261
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 651 PTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHR 544
P V +R L TPS + + PP++L S + TP +
Sbjct: 18 PAVCFSRYSTLVTPSDEVLVPPELLSSRTVGTPERK 53
>11_04_0368 + 16877080-16877496,16879424-16879708
Length = 233
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 388 TTTESSVSRKKGSKGEKERQINANGACHYSFSYNHEKTAVSKS 260
TTT+ S S K+ + + I +G CH ++ + TA+S +
Sbjct: 6 TTTDQSGSNKQQRRRRRHHFILVHGVCHGAWCWYRVTTALSSA 48
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 567 QLTTPRHRKCKGE-SQKTHISSKSKYDWRVPRLCHTYSNLSPAASPRHDDRR 415
+L PR R G+ S + + + D PR YS+L P ++PR DRR
Sbjct: 571 ELPPPRSRATFGDYSSRVPVDRRPYRDDYSPR-GSAYSDLGPRSAPRLSDRR 621
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 615 TPSAQPVPPPQMLPSLQLTTPRHRKC 538
T P PPP + P L PR R+C
Sbjct: 23 TTPPPPPPPPLLSPRRPLLAPRRRRC 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,546,346
Number of Sequences: 37544
Number of extensions: 416985
Number of successful extensions: 2118
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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