Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a11
(719 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119485-1|AAM50139.1| 846|Drosophila melanogaster GH07623p pro... 36 0.073
AE014297-4203|AAF56763.2| 1109|Drosophila melanogaster CG5514-PA... 36 0.073
AE014297-4202|AAN14134.1| 1150|Drosophila melanogaster CG5514-PB... 36 0.073
BT003655-1|AAO39659.1| 722|Drosophila melanogaster AT01386p pro... 31 2.1
AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA... 31 2.1
DQ423241-1|ABD96028.1| 1573|Drosophila melanogaster Gef26 dizzy ... 30 2.8
AE014134-1072|AAF52365.2| 1573|Drosophila melanogaster CG9491-PA... 30 2.8
AY089504-1|AAL90242.1| 1012|Drosophila melanogaster GH13383p pro... 30 3.6
AF434686-1|AAL28130.1| 1573|Drosophila melanogaster guanine nucl... 30 3.6
AE014134-2932|AAF53667.3| 1330|Drosophila melanogaster CG12750-P... 30 3.6
M25294-1|AAA17842.1| 151|Drosophila melanogaster dsx protein. 29 4.8
AE014297-4290|ABI31212.1| 1704|Drosophila melanogaster CG33553-P... 29 4.8
AE014297-4289|AAO41610.1| 2063|Drosophila melanogaster CG33553-P... 29 4.8
AE014297-674|AAF54169.1| 549|Drosophila melanogaster CG11094-PA... 29 4.8
M10017-1|AAA65478.1| 552|Drosophila melanogaster engrailed prot... 29 8.4
AY069448-1|AAL39593.1| 552|Drosophila melanogaster LD16125p pro... 29 8.4
AE013599-3461|AAF46899.2| 1218|Drosophila melanogaster CG3536-PA... 29 8.4
AE013599-1321|AAM68711.1| 552|Drosophila melanogaster CG9015-PB... 29 8.4
AE013599-1320|AAF58639.1| 552|Drosophila melanogaster CG9015-PA... 29 8.4
>AY119485-1|AAM50139.1| 846|Drosophila melanogaster GH07623p
protein.
Length = 846
Score = 35.5 bits (78), Expect = 0.073
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 436 SSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINANGACHYSFSYNHEKTAVSKSS 257
SSSR S+ K++++ S R KG + +KER+ ++ H+S S + +
Sbjct: 419 SSSRHESSSHK-KHKSSSSSSRSERDKGKEKDKEREKDSQSRSHHSSSSSSSSSRRKDHD 477
Query: 256 RGQQQD 239
RG+ +D
Sbjct: 478 RGRDRD 483
>AE014297-4203|AAF56763.2| 1109|Drosophila melanogaster CG5514-PA,
isoform A protein.
Length = 1109
Score = 35.5 bits (78), Expect = 0.073
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 436 SSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINANGACHYSFSYNHEKTAVSKSS 257
SSSR S+ K++++ S R KG + +KER+ ++ H+S S + +
Sbjct: 682 SSSRHESSSHK-KHKSSSSSSRSERDKGKEKDKEREKDSQSRSHHSSSSSSSSSRRKDHD 740
Query: 256 RGQQQD 239
RG+ +D
Sbjct: 741 RGRDRD 746
>AE014297-4202|AAN14134.1| 1150|Drosophila melanogaster CG5514-PB,
isoform B protein.
Length = 1150
Score = 35.5 bits (78), Expect = 0.073
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 436 SSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINANGACHYSFSYNHEKTAVSKSS 257
SSSR S+ K++++ S R KG + +KER+ ++ H+S S + +
Sbjct: 682 SSSRHESSSHK-KHKSSSSSSRSERDKGKEKDKEREKDSQSRSHHSSSSSSSSSRRKDHD 740
Query: 256 RGQQQD 239
RG+ +D
Sbjct: 741 RGRDRD 746
>BT003655-1|AAO39659.1| 722|Drosophila melanogaster AT01386p
protein.
Length = 722
Score = 30.7 bits (66), Expect = 2.1
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Frame = -3
Query: 657 RQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCK------GESQKTHISSKSK 496
RQPT+ +S PS + + P QLT P C G++ + +++
Sbjct: 321 RQPTMPSECLEDVSQPSFERSRSRRQSPRRQLTMPSQNLCDISAPSFGDTTRDRSTNECL 380
Query: 495 YDWRVPRLCHTYSNLSPAASPRHD--DRRIRTASPKKPRQR 379
D +P SN+S + SPR R R + K +R
Sbjct: 381 EDISMPTFEEEVSNVSRSRSPRRKKISRSARNTTDKVSSRR 421
>AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA
protein.
Length = 1860
Score = 30.7 bits (66), Expect = 2.1
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Frame = -3
Query: 657 RQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCK------GESQKTHISSKSK 496
RQPT+ +S PS + + P QLT P C G++ + +++
Sbjct: 267 RQPTMPSECLEDVSQPSFERSRSRRQSPRRQLTMPSQNLCDISAPSFGDTTRDRSTNECL 326
Query: 495 YDWRVPRLCHTYSNLSPAASPRHD--DRRIRTASPKKPRQR 379
D +P SN+S + SPR R R + K +R
Sbjct: 327 EDISMPTFEEEVSNVSRSRSPRRKKISRSARNTTDKVSSRR 367
>DQ423241-1|ABD96028.1| 1573|Drosophila melanogaster Gef26 dizzy AI
isoform protein.
Length = 1573
Score = 30.3 bits (65), Expect = 2.8
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Frame = -3
Query: 630 CRRLSTPSAQPVPPP-QMLPSLQLTTP-----------RHRKCKGESQKTHISSKSKYDW 487
C+ +TP + P PPP Q ++QL+ P +H++ + + Q + +
Sbjct: 1463 CQSTNTPPSTPTPPPNQPTATIQLSAPPTAAAYMHARSQHQQLQQQQQSLAMPPPPPPPY 1522
Query: 486 RVPRLCHTYSNLSPAASPRH 427
VP L YS+ A RH
Sbjct: 1523 NVPPLGSIYSHHQGTAGSRH 1542
>AE014134-1072|AAF52365.2| 1573|Drosophila melanogaster CG9491-PA
protein.
Length = 1573
Score = 30.3 bits (65), Expect = 2.8
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Frame = -3
Query: 630 CRRLSTPSAQPVPPP-QMLPSLQLTTP-----------RHRKCKGESQKTHISSKSKYDW 487
C+ +TP + P PPP Q ++QL+ P +H++ + + Q + +
Sbjct: 1463 CQSTNTPPSTPTPPPNQPTATIQLSAPPTAAAYMHARSQHQQLQQQQQSLAMPPPPPPPY 1522
Query: 486 RVPRLCHTYSNLSPAASPRH 427
VP L YS+ A RH
Sbjct: 1523 NVPPLGSIYSHHQGTAGSRH 1542
>AY089504-1|AAL90242.1| 1012|Drosophila melanogaster GH13383p
protein.
Length = 1012
Score = 29.9 bits (64), Expect = 3.6
Identities = 24/95 (25%), Positives = 38/95 (40%)
Frame = -3
Query: 660 SRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRV 481
SR P+ S R RR S P + + R+ + E Q+ H + + R
Sbjct: 245 SRSPSPSSRR-RRRSRSKGSRTRSRSKSPIRRRSNSLERR-RVERQRRHEERDKRDEERA 302
Query: 480 PRLCHTYSNLSPAASPRHDDRRIRTASPKKPRQRN 376
+ P +S R DD R + SP++ R R+
Sbjct: 303 KEREKRHQKGEPTSSRRRDDSREKKRSPERKRDRS 337
>AF434686-1|AAL28130.1| 1573|Drosophila melanogaster guanine
nucleotide exchange factor protein.
Length = 1573
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Frame = -3
Query: 630 CRRLSTPSAQPVPPP-QMLPSLQLTTP-----------RHRKCKGESQKTHISSKSKYDW 487
C+ +TP + P PPP Q ++QL+ P +H++ + + Q + +
Sbjct: 1463 CQSTNTPPSTPTPPPNQPTATIQLSAPPTAAAYMHARSQHQQLQQQQQSLAMPPPPPPRY 1522
Query: 486 RVPRLCHTYSNLSPAASPRH 427
VP L YS+ A RH
Sbjct: 1523 NVPPLGSIYSHHQGTAGSRH 1542
>AE014134-2932|AAF53667.3| 1330|Drosophila melanogaster CG12750-PA
protein.
Length = 1330
Score = 29.9 bits (64), Expect = 3.6
Identities = 24/95 (25%), Positives = 38/95 (40%)
Frame = -3
Query: 660 SRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRV 481
SR P+ S R RR S P + + R+ + E Q+ H + + R
Sbjct: 245 SRSPSPSSRR-RRRSRSKGSRTRSRSKSPIRRRSNSLERR-RVERQRRHEERDKRDEERA 302
Query: 480 PRLCHTYSNLSPAASPRHDDRRIRTASPKKPRQRN 376
+ P +S R DD R + SP++ R R+
Sbjct: 303 KEREKRHQKGEPTSSRRRDDSREKKRSPERKRDRS 337
>M25294-1|AAA17842.1| 151|Drosophila melanogaster dsx protein.
Length = 151
Score = 29.5 bits (63), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 681 VNCAACCSRQPTVSKARCRRLSTPSAQPVPPP 586
V A S PT+S+ + R +TP+ P PPP
Sbjct: 98 VTTMATTSSTPTLSRRQRSRSATPTTPPPPPP 129
>AE014297-4290|ABI31212.1| 1704|Drosophila melanogaster CG33553-PH,
isoform H protein.
Length = 1704
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -3
Query: 678 NCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLT 559
+ +A SRQP SKA RR ST SA V PP M Q T
Sbjct: 248 SASASASRQP--SKAGSRRGSTTSATGVEPPLMAAPPQPT 285
>AE014297-4289|AAO41610.1| 2063|Drosophila melanogaster CG33553-PD,
isoform D protein.
Length = 2063
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -3
Query: 678 NCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLT 559
+ +A SRQP SKA RR ST SA V PP M Q T
Sbjct: 248 SASASASRQP--SKAGSRRGSTTSATGVEPPLMAAPPQPT 285
>AE014297-674|AAF54169.1| 549|Drosophila melanogaster CG11094-PA,
isoform A protein.
Length = 549
Score = 29.5 bits (63), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 681 VNCAACCSRQPTVSKARCRRLSTPSAQPVPPP 586
V A S PT+S+ + R +TP+ P PPP
Sbjct: 496 VTTMATTSSTPTLSRRQRSRSATPTTPPPPPP 527
>M10017-1|AAA65478.1| 552|Drosophila melanogaster engrailed protein
protein.
Length = 552
Score = 28.7 bits (61), Expect = 8.4
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = -3
Query: 618 STPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHTYSNLSPAA 439
S+P QP+PPP + S + E+ T W C YS+ P++
Sbjct: 380 SSPQPQPIPPPSAV-SRDSGMESSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSD-RPSS 437
Query: 438 SPRH---DDRRIRTASPKKPR 385
PR+ + +T K+PR
Sbjct: 438 GPRYRRPKQPKDKTNDEKRPR 458
>AY069448-1|AAL39593.1| 552|Drosophila melanogaster LD16125p
protein.
Length = 552
Score = 28.7 bits (61), Expect = 8.4
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = -3
Query: 618 STPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHTYSNLSPAA 439
S+P QP+PPP + S + E+ T W C YS+ P++
Sbjct: 380 SSPQPQPIPPPSAV-SRDSGMESSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSD-RPSS 437
Query: 438 SPRH---DDRRIRTASPKKPR 385
PR+ + +T K+PR
Sbjct: 438 GPRYRRPKQPKDKTNDEKRPR 458
>AE013599-3461|AAF46899.2| 1218|Drosophila melanogaster CG3536-PA
protein.
Length = 1218
Score = 28.7 bits (61), Expect = 8.4
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -3
Query: 555 PRHRKCKGESQKTHISSKSKYDWRVPRLCHTYSNLSPAASPRHDDRRIRTASPKKPRQRN 376
P ++ S +TH S Y R+ R + ++SP+A + R RT S R ++
Sbjct: 1014 PHRQESTQTSSQTHGYSPRSYADRLARATDSPRSVSPSAHGSEERPRSRTTSHHSIRPQS 1073
Query: 375 QVYH 364
Q H
Sbjct: 1074 QPSH 1077
>AE013599-1321|AAM68711.1| 552|Drosophila melanogaster CG9015-PB,
isoform B protein.
Length = 552
Score = 28.7 bits (61), Expect = 8.4
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = -3
Query: 618 STPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHTYSNLSPAA 439
S+P QP+PPP + S + E+ T W C YS+ P++
Sbjct: 380 SSPQPQPIPPPSAV-SRDSGMESSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSD-RPSS 437
Query: 438 SPRH---DDRRIRTASPKKPR 385
PR+ + +T K+PR
Sbjct: 438 GPRYRRPKQPKDKTNDEKRPR 458
>AE013599-1320|AAF58639.1| 552|Drosophila melanogaster CG9015-PA,
isoform A protein.
Length = 552
Score = 28.7 bits (61), Expect = 8.4
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = -3
Query: 618 STPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRVPRLCHTYSNLSPAA 439
S+P QP+PPP + S + E+ T W C YS+ P++
Sbjct: 380 SSPQPQPIPPPSAV-SRDSGMESSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSD-RPSS 437
Query: 438 SPRH---DDRRIRTASPKKPR 385
PR+ + +T K+PR
Sbjct: 438 GPRYRRPKQPKDKTNDEKRPR 458
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,736,365
Number of Sequences: 53049
Number of extensions: 704846
Number of successful extensions: 3548
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3537
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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