Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a11
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 33 0.16
AF039044-8|AAG24129.1| 717|Caenorhabditis elegans Nuclear hormo... 31 0.63
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 30 1.4
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 30 1.9
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 29 2.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 2.5
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 29 4.4
AF016447-3|AAG24018.1| 349|Caenorhabditis elegans Hypothetical ... 29 4.4
AC025716-12|AAK39604.1| 704|Caenorhabditis elegans Hypothetical... 28 5.8
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z78412-4|CAB01654.2| 211|Caenorhabditis elegans Hypothetical pr... 28 7.7
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 28 7.7
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 28 7.7
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 28 7.7
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 28 7.7
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 33.5 bits (73), Expect = 0.16
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Frame = -3
Query: 702 KRHRRRNVNCAACCSRQPTVSKA----RCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCK 535
KR + R+ + A R P+ SK+ R RR + S P P ++ P+ + +P K
Sbjct: 362 KRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSP 421
Query: 534 GESQKTHISSKSKYDWRVPRLCHTYSNLSPAASPRHDDRRIRTASPKKPRQR 379
++ SKS PR + S S + +PR RR + SP+ PR+R
Sbjct: 422 PAPKRAKSRSKSP---PAPRRRRSPSQ-SKSPAPRR--RRSPSKSPQAPRRR 467
Score = 31.1 bits (67), Expect = 0.83
Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 2/140 (1%)
Frame = -3
Query: 660 SRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYDWRV 481
SR + R RR + S P P + PS PR R+ SKS R
Sbjct: 429 SRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPS-------GSKS----RS 477
Query: 480 PRLCHTYSNLSPAASPRHDDRRIRTASPKKPR--QRNQVYHEXXXXXXXXXXKSTQTEPV 307
PR SPAA+PR R SP++ R + S Q PV
Sbjct: 478 PR-----RRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPRQDSEQQAPV 532
Query: 306 IIRSPITMKKLQSPNHQEAN 247
++SP MKK + PN +++
Sbjct: 533 AVKSP-EMKK-RRPNDTDSD 550
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Frame = -3
Query: 702 KRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPP---QMLPSLQLTTPRHRKCKG 532
KRH + A S RR +PSA PPP + PS Q +P ++ K
Sbjct: 278 KRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSPPPARRRRSPS-QSKSPAPKRAKS 336
Query: 531 ES-------QKTHISSKSKYDWRVPRLCHTYSNLSPAASPRHDDRRIRTASPKKPRQR 379
S ++ S SK P+ + S PA R + SP PR+R
Sbjct: 337 RSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS---ASKSPPAPRRR 391
>AF039044-8|AAG24129.1| 717|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 83 protein.
Length = 717
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 515 CVFCDSPLHLRCLGVVSCR 571
CV CD P H R GV+SCR
Sbjct: 369 CVICDQPSHGRHFGVLSCR 387
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 513 YVFFAILLYIYDVSALSAVGTAASVA 590
+ FFA+L IYD S LS +G+ VA
Sbjct: 394 FAFFAVLFIIYDFSILSLLGSFTGVA 419
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 657 RQPTVSKARCRRLSTPSAQPVPPPQML-PSLQLTTPRHRKCKGESQKTHISSKSKYDWRV 481
++ TV AR L TP P+P ++ PS T + + S++ S+ S RV
Sbjct: 275 KKDTVELARIESLETPPLSPIPEDEIKEPSPSKTNQKLNRSNSRSEERRGSTNSTVSHRV 334
Query: 480 PR 475
R
Sbjct: 335 NR 336
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 705 LKRHRRRNVNCAACC----SRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTP 553
+++HR+R+ A QP A +TPSA+P PP + P + + P
Sbjct: 795 IRQHRQRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVP 849
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 327 ICLSFSPFEPFFRDTLDSVVVVFSAKLYE 413
+C S F+PF+R +L S+V V + KL++
Sbjct: 2711 MCYSLYLFDPFYRISLKSLVNVLNTKLFD 2739
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 327 ICLSFSPFEPFFRDTLDSVVVVFSAKLYE 413
+C S F+PF+R +L S+V V + KL++
Sbjct: 2711 MCYSLYLFDPFYRISLKSLVNVLNTKLFD 2739
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 705 LKRHRRRNVNCAACC----SRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTP 553
+++HR+R+ A QP A +TPSA+P PP + P + + P
Sbjct: 795 IRQHRQRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVP 849
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 708 NLKRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLT 559
N +R RRN N + + + S + R S+PS P PPP PS LT
Sbjct: 1305 NNRRGNRRNTNEHIQANHEDSDSFSTSRS-SSPSPPPPPPPPPPPSDDLT 1353
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 515 CVFCDSPLHLRCLGVVSCR 571
CV C P H R GV+SCR
Sbjct: 11 CVICGQPSHGRHFGVLSCR 29
>AF016447-3|AAG24018.1| 349|Caenorhabditis elegans Hypothetical
protein C54F6.8 protein.
Length = 349
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 500 DFDEICVFCDSPLHLRCLGVVSC 568
DF+++C C P R G VSC
Sbjct: 13 DFEKVCTVCRRPAFTRYYGAVSC 35
>AC025716-12|AAK39604.1| 704|Caenorhabditis elegans Hypothetical
protein Y39G10AR.15 protein.
Length = 704
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -3
Query: 654 QPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYD 490
+P + + +L P A+P PPP +P ++ + ++ K K + T K D
Sbjct: 126 RPKLEPEQPEKLERPLARPQPPPPAIPVVKKISKQNTKDKKSGRITDRKIHKKKD 180
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 430 SRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINA 320
S++PK S EK E+S KK KG+ +R A
Sbjct: 41 SKKPKPSRGNDEKGREPETSAQSKKAKKGKPKRDSKA 77
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 64 SGTVGLA-HAISIMYVAGQT*YRRIFISMWTQVEXXXXXVMTFNYFIY*IVWK*FNRYLC 240
S T+G A +++ + G +R MW + E + +++ IVW+ C
Sbjct: 461 SATIGTAIMCLTVCWCYGLDNFRADIREMWEEPESRLDKYLGPGAYVWTIVWRFVTPICC 520
Query: 241 PVVGLLMIW 267
V+ IW
Sbjct: 521 LVIMFAWIW 529
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 64 SGTVGLA-HAISIMYVAGQT*YRRIFISMWTQVEXXXXXVMTFNYFIY*IVWK*FNRYLC 240
S T+G A +++ + G +R MW + E + +++ IVW+ C
Sbjct: 461 SATIGTAIMCLTVCWCYGLDNFRADIREMWEEPESRLDKYLGPGAYVWTIVWRFVTPICC 520
Query: 241 PVVGLLMIW 267
V+ IW
Sbjct: 521 LVIMFAWIW 529
>Z78412-4|CAB01654.2| 211|Caenorhabditis elegans Hypothetical
protein M176.5 protein.
Length = 211
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 445 RCLSSSRRPKDSYSFAEKTTTTESSVSRKKGSKGEKERQINAN 317
+C+S + K + +F+ + T+ S VSRKK S +R+ N
Sbjct: 110 QCISIHDKFKFAKNFSSEELTSTSPVSRKKRSARRNKREARRN 152
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 273 QSPNHQEANNRTQIPIKLFP 214
+SPNH+ +N R ++P+ FP
Sbjct: 830 RSPNHRSSNLRDELPLSSFP 849
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 273 QSPNHQEANNRTQIPIKLFP 214
+SPNH+ +N R ++P+ FP
Sbjct: 833 RSPNHRSSNLRDELPLSSFP 852
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 533 PLHLRCLGVVSCRDGS 580
P H RC GV C DGS
Sbjct: 471 PFHTRCNGVAECSDGS 486
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 273 QSPNHQEANNRTQIPIKLFP 214
+SPNH+ +N R ++P+ FP
Sbjct: 830 RSPNHRSSNLRDELPLSSFP 849
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,486,973
Number of Sequences: 27780
Number of extensions: 349662
Number of successful extensions: 1609
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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