Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a11
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 423  DRRIRTASPKKPRQRNQ 373
            DR+  T++P++P+Q+ Q
Sbjct: 1439 DRKTLTSAPQQPQQQQQ 1455


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 324 TQTEPVIIRSPITMKKL 274
           TQT   +IRSP T++K+
Sbjct: 889 TQTLDKLIRSPDTLRKI 905


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 503 FDEICVFCDSPLHLRCLGVVSCRDGS-ICGG 592
           F E C    S   +   G+ S RD S ICGG
Sbjct: 327 FKETCRCSPSNPSITRTGLSSVRDSSIICGG 357


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 429  DEERQREINCYMC 467
            D +R+R  +CY+C
Sbjct: 1059 DSDRERLYDCYVC 1071


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 384 VVVFSAKLYESFGRRDEERQREINCYMCD 470
           V+   A L      +  ERQ E  C +C+
Sbjct: 14  VLCSKASLKRHVADKHAERQEEYRCVICE 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,232
Number of Sequences: 438
Number of extensions: 5101
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)