Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a06
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    33   0.063
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    28   1.8  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    28   1.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.4  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   5.4  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    26   7.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   9.5  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 735 DALRPVSGKGDRRVFSENVKVEKQH-FTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKK 559
           + L+PVS K     F+ +   ++Q   TSNE+ + I    +  D        +VSH E +
Sbjct: 21  EGLQPVSAKPSETAFNSDASEKEQSPTTSNEEEDAISDMEDKEDVSFGSKILRVSHQEVE 80

Query: 558 KSTL 547
           K TL
Sbjct: 81  KPTL 84


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -1

Query: 696 VFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAH 535
           V S+ VKV K   TS ++    EK  + ++++EKK   K    + K+  LD++H
Sbjct: 123 VSSKKVKVRK---TSGKESSKREKSKKKKEKKEKKDKLK---KKSKRLKLDDSH 170


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = -1

Query: 708 GDRRVFSENV---KVEKQHFTSNEKRENIEK-GVESRDRQEK----KSDPKVSHHEKKKS 553
           G R  FS+++   K+E +   +N K E  EK G + +D +E     K+D K+S +E   S
Sbjct: 160 GVRYGFSDDIMKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSS 219

Query: 552 TLD 544
            ++
Sbjct: 220 LIE 222


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -1

Query: 705 DRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSD---PKVSHHEKKKSTLD-EA 538
           D++   +NV+  ++   +NE+ E  E+  E  +  E +S     K + H+++   LD EA
Sbjct: 92  DKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEA 151

Query: 537 HFEPD 523
             + D
Sbjct: 152 EVDED 156


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 678 KVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEP 526
           + E++  T  +  ++     +S DR+++K   K   H K + T +E    P
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 687 ENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEA 538
           E +K +  + TS  +  N+E+G+   +++  K    +S+H   +S ++EA
Sbjct: 460 EELKNQNDYLTS--QITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEA 507


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 720 VSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQ 601
           + GK D    +E     KQ F  N   E+ EKG+E+ DR+
Sbjct: 325 LKGKNDEE--AEEFYKPKQSFFDNISCESKEKGMEAADRR 362


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 633 IEKGVESRDRQEKKSDPKVSHHEKKK 556
           ++ G+   D  EKKS    SH EK+K
Sbjct: 4   LQDGITQEDSIEKKSKNVASHGEKRK 29


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -1

Query: 747 IEKGDALRPVSGKGDRRVFSENVKVEKQHFTSNEKR--ENIEKGVESRDRQEKKSDPKVS 574
           ++  + ++ +S K ++   SEN K E Q  T+   R    I + V+++  Q+K ++    
Sbjct: 16  LDSDEEVQRISDKVNQLNTSEN-KNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAE 74

Query: 573 HHEKKKSTLDEAHFEPD 523
               K+S  DE++  P+
Sbjct: 75  DANTKQSENDESNLIPN 91


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 678  KVEKQHFTSNEK----RENIEKGVESRDRQEKKSDPKVS 574
            K  +Q   +NE     +E+  K +E +DRQEK+ + ++S
Sbjct: 4018 KSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMS 4056


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -1

Query: 663 HFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
           H    +K  N++    ++  +++  DP +S HE ++
Sbjct: 26  HVKKYDKNTNLQSNRNAKALEKRVQDPSISEHECRR 61


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/48 (20%), Positives = 28/48 (58%)
 Frame = -1

Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFE 529
           E+Q     E+++ ++  +E  + + ++++ +   +EK+K  L+E + E
Sbjct: 145 ERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEE 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,109
Number of Sequences: 5004
Number of extensions: 34822
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)