Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a06
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0050 + 17579872-17580103,17580206-17580262,17581178-175814... 32 0.61
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 31 1.1
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 31 1.1
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 30 2.5
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 30 2.5
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 29 4.3
02_05_0255 - 27184306-27184914,27185009-27185272 29 5.7
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 28 7.5
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 28 9.9
01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121 28 9.9
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 9.9
>01_05_0050 +
17579872-17580103,17580206-17580262,17581178-17581413,
17581509-17581637,17581752-17581811,17582088-17582158,
17582568-17582673,17582753-17582791
Length = 309
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 678 KVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPD 523
+V+K S +R+N + S++ EKK P S +K+K ++ FE D
Sbjct: 219 QVQKSKKDSGRQRQNRRRKKRSQNHVEKKQKPLTSDKKKRKIEKKKSRFERD 270
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 741 KGDALRPVSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSD-PKVSHHE 565
K + +P K + + E K E++ + EK++ EK E ++EKK + PKV
Sbjct: 84 KKEEKKPDQAKKEEKKQPEEKKPEEKKKSEEEKKKGDEKKPEEGKKEEKKEEKPKVKEET 143
Query: 564 K 562
K
Sbjct: 144 K 144
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRD-RQEKKSDPK-VSHHEKKKSTLDEAHFEPD 523
SE +V + +S EK+E E+ + R+ R+ KK++ K VS + S LD+ + +PD
Sbjct: 58 SEGGEVGRSAISSTEKKE--ERNRKQREYRERKKAESKRVSEDDATLSVLDKENIDPD 113
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 705 DRRVFSEN-VKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFE 529
D ++F + V+ +K+ + E++ E E +D +EKK + + EKK+ E E
Sbjct: 78 DGKLFDDGKVEAKKKAAAAEEEKAVEEAAGEKKDGEEKKEEEEPVTEEKKEEEQGEEEEE 137
Query: 528 P 526
P
Sbjct: 138 P 138
>03_02_0762 - 10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -1
Query: 726 RPVSGKGDRRVFSENVKVEKQ-HFTSNEKRENIEKG-VESRDRQEKKSDPKVSHHEK 562
+P + + R SE + +KQ H ++N++ E IE+G + +D Q+ S K +H K
Sbjct: 933 KPRAFRISRNQASEKSEQQKQQHVSNNQEYEEIEEGELIEQDHQDTASRSKSNHQRK 989
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/41 (21%), Positives = 25/41 (60%)
Frame = -1
Query: 678 KVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
++EKQ + ++ E + + +E DR+ +K + ++ ++K+
Sbjct: 453 ELEKQDMLNRKREEQVRREMERNDRERRKEEERLLREKQKE 493
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 738 GDALRPVSGKGDRRVFSENVKVEKQHFTSNEKR--ENIEKGVESRDRQEKKSDPKVSHHE 565
G+A V K DR +F +N+ K+ EK+ E + G+E +E K + + E
Sbjct: 13 GEAAEQVEVK-DRGLF-DNLLGRKKDDQPEEKKHEEELVTGMEKVSVEEPKKEEHHAEGE 70
Query: 564 KKKSTLDEAH 535
KK+S L + H
Sbjct: 71 KKESLLSKLH 80
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 702 RRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPD 523
+++ S+ +EK E+ E + G +++KKSD HEKKK + H E
Sbjct: 444 KQINSKPPTMEKITDGRTERMEKVRDGAPDVAKEDKKSD----RHEKKKRKEKDKHKEKK 499
Query: 522 YD 517
D
Sbjct: 500 RD 501
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -1
Query: 705 DRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLD 544
D+ + E V++ + N++ EN++ ++ D QEK+ + ++KK L+
Sbjct: 315 DKEMTLEGSTVQEAGNSDNKEVENLDSQLKEDDNQEKEDEEAALITDEKKLALE 368
>01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121
Length = 145
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 735 DALR-PVSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKK 559
D LR P GK R + V S+EK+E EK + +D +EKK K E+K
Sbjct: 53 DKLRHPKKGKEKREGYMVEVMA-----VSDEKKEAEEK--KKKDEEEKKKKEKEKEEEEK 105
Query: 558 K 556
K
Sbjct: 106 K 106
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -1
Query: 705 DRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
+RR+ E +EKQ ++ E + K +E DR+ +K + ++ +++
Sbjct: 172 ERRIRKE---LEKQDMMKRKREEQMRKEMERHDRERRKEEERLLRERQRE 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,494,416
Number of Sequences: 37544
Number of extensions: 161900
Number of successful extensions: 529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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