Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a06
(798 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U48508-1|AAC51191.1| 5038|Homo sapiens skeletal muscle ryanodine... 32 2.1
J05200-1|AAA60294.1| 5032|Homo sapiens RYR1 protein. 32 2.1
BC113387-1|AAI13388.1| 248|Homo sapiens family with sequence si... 31 3.6
BC113385-1|AAI13386.1| 248|Homo sapiens family with sequence si... 31 3.6
BC032762-1|AAH32762.1| 571|Homo sapiens OPTN protein protein. 31 3.6
BC013876-1|AAH13876.1| 577|Homo sapiens optineurin protein. 31 3.6
AL009173-2|CAI42611.1| 248|Homo sapiens novel protein protein. 31 3.6
AK094978-1|BAC04467.1| 248|Homo sapiens protein ( Homo sapiens ... 31 3.6
AF420373-1|AAL76329.1| 577|Homo sapiens optineurin isoform 3 pr... 31 3.6
AF420372-1|AAL76328.1| 577|Homo sapiens optineurin isoform 2 pr... 31 3.6
AF420371-1|AAL76327.1| 577|Homo sapiens optineurin isoform 1 pr... 31 3.6
AF283527-1|AAG00497.1| 577|Homo sapiens FIP2 protein. 31 3.6
AF061034-2|AAC16047.1| 520|Homo sapiens FIP2 protein. 31 3.6
AF061034-1|AAC16046.1| 577|Homo sapiens FIP2 protein. 31 3.6
BC068006-1|AAH68006.1| 627|Homo sapiens ERC1 protein protein. 31 6.4
AL355355-6|CAI16550.1| 571|Homo sapiens optineurin protein. 30 8.4
AL355355-5|CAI16549.1| 577|Homo sapiens optineurin protein. 30 8.4
>U48508-1|AAC51191.1| 5038|Homo sapiens skeletal muscle ryanodine
receptor protein.
Length = 5038
Score = 32.3 bits (70), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 708 GDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
GD V +E + FT E+ E+ E+ E D +EK+ D + + EK+ +E
Sbjct: 1855 GDEDVKQILKMIEPEVFTEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEE 1910
>J05200-1|AAA60294.1| 5032|Homo sapiens RYR1 protein.
Length = 5032
Score = 32.3 bits (70), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 708 GDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
GD V +E + FT E+ E+ E+ E D +EK+ D + + EK+ +E
Sbjct: 1854 GDEDVKQILKMIEPEVFTEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEE 1909
>BC113387-1|AAI13388.1| 248|Homo sapiens family with sequence
similarity 133, member A protein.
Length = 248
Score = 31.5 bits (68), Expect = 3.6
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -1
Query: 663 HFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
H + +E +E+++K +S+D EK+ D + ++KKS D+
Sbjct: 147 HESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>BC113385-1|AAI13386.1| 248|Homo sapiens family with sequence
similarity 133, member A protein.
Length = 248
Score = 31.5 bits (68), Expect = 3.6
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -1
Query: 663 HFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
H + +E +E+++K +S+D EK+ D + ++KKS D+
Sbjct: 147 HESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>BC032762-1|AAH32762.1| 571|Homo sapiens OPTN protein protein.
Length = 571
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 263 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 318
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 319 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 362
>BC013876-1|AAH13876.1| 577|Homo sapiens optineurin protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 368
>AL009173-2|CAI42611.1| 248|Homo sapiens novel protein protein.
Length = 248
Score = 31.5 bits (68), Expect = 3.6
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -1
Query: 663 HFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
H + +E +E+++K +S+D EK+ D + ++KKS D+
Sbjct: 147 HESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>AK094978-1|BAC04467.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ37659 fis, clone BRHIP2010610, weakly similar to
GAR2 PROTEIN. ).
Length = 248
Score = 31.5 bits (68), Expect = 3.6
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -1
Query: 663 HFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
H + +E +E+++K +S+D EK+ D + ++KKS D+
Sbjct: 147 HESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>AF420373-1|AAL76329.1| 577|Homo sapiens optineurin isoform 3
protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 368
>AF420372-1|AAL76328.1| 577|Homo sapiens optineurin isoform 2
protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 368
>AF420371-1|AAL76327.1| 577|Homo sapiens optineurin isoform 1
protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 368
>AF283527-1|AAG00497.1| 577|Homo sapiens FIP2 protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYPNKKLELQVESM 368
>AF061034-2|AAC16047.1| 520|Homo sapiens FIP2 protein.
Length = 520
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 212 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 267
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 268 LMKKRLQEKCQALERKNSAIPSELNEKQELVYPNKKLELQVESM 311
>AF061034-1|AAC16046.1| 577|Homo sapiens FIP2 protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH + +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-EAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYPNKKLELQVESM 368
>BC068006-1|AAH68006.1| 627|Homo sapiens ERC1 protein protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 648 EKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
EK IE+ E RDR E++ ++ +++KKK
Sbjct: 596 EKERTIERLKEQRDRDEREKQEEIDNYKKKK 626
>AL355355-6|CAI16550.1| 571|Homo sapiens optineurin protein.
Length = 571
Score = 30.3 bits (65), Expect = 8.4
Identities = 27/104 (25%), Positives = 47/104 (45%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH +
Sbjct: 263 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-KAE 318
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 319 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 362
>AL355355-5|CAI16549.1| 577|Homo sapiens optineurin protein.
Length = 577
Score = 30.3 bits (65), Expect = 8.4
Identities = 27/104 (25%), Positives = 47/104 (45%)
Frame = -1
Query: 690 SENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEPDYDXX 511
S ++E Q S EK + EKG E+ + + + +V+ K+ L EAH +
Sbjct: 269 SNRSEIETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKE---LQEAHTKLS-KAE 324
Query: 510 XXXXXXXXXXXXXKRDYMSLSDKLSDKMNINYENKKSKLDVESL 379
+R ++ +L++K + Y NKK +L VES+
Sbjct: 325 LMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKKLELQVESM 368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,471,949
Number of Sequences: 237096
Number of extensions: 1005912
Number of successful extensions: 4237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4206
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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