Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a06
(798 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p pro... 30 3.2
AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA... 30 3.2
AE014134-138|AAF51469.2| 826|Drosophila melanogaster CG2839-PA ... 30 3.2
BT025191-1|ABF17882.1| 931|Drosophila melanogaster FI01302p pro... 30 4.2
BT001257-1|AAN71013.1| 930|Drosophila melanogaster AT01735p pro... 30 4.2
AE014297-2007|AAF55168.1| 931|Drosophila melanogaster CG4913-PA... 30 4.2
AY061272-1|AAL28820.1| 707|Drosophila melanogaster LD19634p pro... 29 7.4
AE014296-2322|AAF49789.1| 952|Drosophila melanogaster CG8833-PA... 29 7.4
U80064-1|AAC24158.1| 972|Drosophila melanogaster DNA topoisomer... 29 9.7
M74557-1|AAA28951.1| 972|Drosophila melanogaster topoisomerase ... 29 9.7
BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p pro... 29 9.7
AF132148-1|AAD34736.1| 653|Drosophila melanogaster unknown prot... 29 9.7
AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC... 29 9.7
AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA... 29 9.7
AE014297-3634|AAF56342.1| 653|Drosophila melanogaster CG5808-PA... 29 9.7
AE014134-2984|AAF53715.3| 1377|Drosophila melanogaster CG10600-P... 29 9.7
>BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p
protein.
Length = 328
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 720 VSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKS 553
V GK R +++V++ K + +K++ +KG + EKKS K +KKKS
Sbjct: 203 VWGKSPSRPETDDVELVKGSYIGPKKKK--KKGKRKHKKSEKKSKKKSKKSKKKKS 256
>AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA
protein.
Length = 463
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 720 VSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKS 553
V GK R +++V++ K + +K++ +KG + EKKS K +KKKS
Sbjct: 185 VWGKSPSRPETDDVELVKGSYIGPKKKK--KKGKRKHKKSEKKSKKKSKKSKKKKS 238
>AE014134-138|AAF51469.2| 826|Drosophila melanogaster CG2839-PA
protein.
Length = 826
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 705 DRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEK--KSDPKVSHHEKKK 556
+RR E K E++ KRE+ K E R R+EK K + K E++K
Sbjct: 335 ERRKEEERKKEEEREREEERKREHNRKKEEERKREEKRRKEEEKRKEEERRK 386
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 705 DRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDEAHFEP 526
+RR E K E++ KRE ++ E R R+E+K + E++K DE E
Sbjct: 656 ERRREEEKRKEEERRKEEERKREEEKRKEEKRKREEEKRKKEERKREEEKRKEDERKREE 715
Query: 525 D 523
+
Sbjct: 716 E 716
>BT025191-1|ABF17882.1| 931|Drosophila melanogaster FI01302p
protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 726 RPVSGK-GDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
+P G G + VK K N+K +EK + ++ +K DPKV EK +
Sbjct: 685 KPTKGNTGSGKETKSTVKEHKGKSKQNDK--TLEKNTDKTEKPDKTPDPKVDKSEKSE 740
>BT001257-1|AAN71013.1| 930|Drosophila melanogaster AT01735p
protein.
Length = 930
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 726 RPVSGK-GDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
+P G G + VK K N+K +EK + ++ +K DPKV EK +
Sbjct: 685 KPTKGNTGSGKETKSTVKEHKGKSKQNDK--TLEKNTDKTEKPDKTPDPKVDKSEKSE 740
>AE014297-2007|AAF55168.1| 931|Drosophila melanogaster CG4913-PA
protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 726 RPVSGK-GDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKK 556
+P G G + VK K N+K +EK + ++ +K DPKV EK +
Sbjct: 685 KPTKGNTGSGKETKSTVKEHKGKSKQNDK--TLEKNTDKTEKPDKTPDPKVDKSEKSE 740
>AY061272-1|AAL28820.1| 707|Drosophila melanogaster LD19634p
protein.
Length = 707
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = -1
Query: 744 EKGDALRPVSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHE 565
EK + +SG D S N N+KR + K +S K K
Sbjct: 625 EKWVEKKCISGSEDSDASSSNESSSSDSSDDNDKRSKLSKPKKSHKGSSSKKSKKSKLKS 684
Query: 564 KKKSTLDE 541
KKKS E
Sbjct: 685 KKKSKKSE 692
>AE014296-2322|AAF49789.1| 952|Drosophila melanogaster CG8833-PA
protein.
Length = 952
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = -1
Query: 744 EKGDALRPVSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHE 565
EK + +SG D S N N+KR + K +S K K
Sbjct: 870 EKWVEKKCISGSEDSDASSSNESSSSDSSDDNDKRSKLSKPKKSHKGSSSKKSKKSKLKS 929
Query: 564 KKKSTLDE 541
KKKS E
Sbjct: 930 KKKSKKSE 937
>U80064-1|AAC24158.1| 972|Drosophila melanogaster DNA topoisomerase
I protein.
Length = 972
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLD 544
E++H +SN + E SRD+ KS S H K D
Sbjct: 60 EREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERD 102
>M74557-1|AAA28951.1| 972|Drosophila melanogaster topoisomerase I
protein.
Length = 972
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLD 544
E++H +SN + E SRD+ KS S H K D
Sbjct: 60 EREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERD 102
>BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p
protein.
Length = 974
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLD 544
E++H +SN + E SRD+ KS S H K D
Sbjct: 62 EREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERD 104
>AF132148-1|AAD34736.1| 653|Drosophila melanogaster unknown
protein.
Length = 653
Score = 28.7 bits (61), Expect = 9.7
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = -1
Query: 672 EKQHF-TSNEKRENIEKGVESRDRQEKKSD----PKVSHHEKKKSTLDEA 538
E+ H TS +R + E+ +SR+R++ + D P SH +K+K +++++
Sbjct: 528 ERSHRETSRNQRRSPERRQQSRNREDHRMDTHSSPNKSHEKKRKLSVEKS 577
>AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC,
isoform C protein.
Length = 974
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLD 544
E++H +SN + E SRD+ KS S H K D
Sbjct: 62 EREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERD 104
>AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA,
isoform A protein.
Length = 974
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLD 544
E++H +SN + E SRD+ KS S H K D
Sbjct: 62 EREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERD 104
>AE014297-3634|AAF56342.1| 653|Drosophila melanogaster CG5808-PA
protein.
Length = 653
Score = 28.7 bits (61), Expect = 9.7
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = -1
Query: 672 EKQHF-TSNEKRENIEKGVESRDRQEKKSD----PKVSHHEKKKSTLDEA 538
E+ H TS +R + E+ +SR+R++ + D P SH +K+K +++++
Sbjct: 528 ERSHRETSRNQRRSPERRQQSRNREDHRMDTHSSPNKSHEKKRKLSVEKS 577
>AE014134-2984|AAF53715.3| 1377|Drosophila melanogaster CG10600-PA
protein.
Length = 1377
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 672 EKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHEKKKSTLDE 541
+K+ ++ + E+G E +EKK+D H KS+L E
Sbjct: 1002 DKEKSRGKDRDKEKERGKEKEKEKEKKNDTPKKHATPAKSSLSE 1045
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,268,872
Number of Sequences: 53049
Number of extensions: 304562
Number of successful extensions: 1464
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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