Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a05
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   7.8  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   7.8  

>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 842 EEKSLYYCALACDQFAYFLCGIEIQVYAFYH 750
           E ++LYY  L C  ++Y++ G+++ +   Y+
Sbjct: 214 ELQNLYYDLLLCFSYSYYVPGVKLLLPMLYN 244


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 792 LSVWDRNSGLCFLSLT 745
           + VWD NSG C ++ T
Sbjct: 363 IKVWDMNSGFCIVTFT 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,595
Number of Sequences: 5004
Number of extensions: 67779
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)